RNA id: TU52524


Basic Information

Item Value
RNA id TU52524
length 2622
RNA type TUCP
GC content 0.45
exon number 3
gene id G39116
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16517536 ~ 16543580 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGAAGGTTGCTTCTAGCTGGAGGTGAGTCGAAAAGACCGGGCCTCAAGTGAACGGCTGTAGAACAGATGTCGCTAAACGAAGAACACTACGGAAAACAAAGGACCGAAAGACTTTCTTGTTTCCCCTACTACAAACTTTTGTATATACaccttttttttggtttttatcTGAACTGCAACAACAAAGGAGGAGCGGGGATGGCCCGGGGGAGGATGCAGACAGAACGGAGCCAATTAAAGCACCGGAGTGGTCCCCGAGGCAGTCATCGTCTTCAGAACGCTAACTATCACAGTCTGAGGTCAGTCCGTGACACCACGCAAACCCCTCCAGAAGTAAGAAAAGCATTGCACTCACCCTGGCTGGTTAGTCCCACACTCACATTGAACGCAACACATAGggaaaaggagacagaggaggaggggggtgtTACCGGCTAGGCTAACCTTTAGTAGCGGTGGTTTTTAACGAGCCCGGTTAGTTTAGCGTTCGTTCGTAACAAGCCtacaaaggggagagagagcatcTAGTCTTTCACCATGGCTACGAATCCATTTCAAACAAGCCAAGAGTTATACAAACATCCAAAACATTGCTTCATCTCTCACTGGGGCTCTGCATTGTAATTTTGATTCAGGCCATGGATGCTTAGTTAAATAAAGAGCAGTGCCTGAGTTTTTTCTAAGAAATATAATACTGTGGGGCTTACAGCAGTGCCATTTAATCTTTCACAGATATTAATACTCAGCCAGTTTCAGCACCATACAATGTAGCGCCATCAGGAAGAGGTGTCAAAACAGCACGAGGAAGACAAGGAGGGGAAAGTGTTGGTGTTGTCAGTGCTATCTGGTGAGATTACCCTCTGGAAACACCAGTCTGATTACTTTTGAGAAACATGCAACAAAACGGATCAACCTTACAGCTGGAAACTTCCTGAAAACAGGACATTCCCGGACATTTTAAATGCAGTAACACACGAAAGATCTAAATGAGTGTGTAAAGCTTTGACAGCCCATCAGTCAAATATTGTACCACCACCAAGTTTTAAATATATTCCACCCTAGAGCTTCATGTTTGCATGCTTATGCAGAATTCAGCCACCATAAATCCAAACAATGCCCGCGAGCTGAAATTATGGGGGGGGATACTTGGGTAATATCAAGCAGAATACATCTGTTCTCCCCAGTGGCAGGATATTCAGGCAAGATAAATCTGACTGGATGCTCAACAAAACTGACGGAAACGACACTACTACCACTACACGACACGCAGGCAATGAAATGGTGATGCTGGCGAAATTTCCTAAAAAGCAAGCTACTAGCCAGTCTACAAGCTTTACGGGCTGGAGatattctgtgtttttcttattaaataaataaaaagaccaaaacaagaGAGAGCATTCACTGCAGTGCAAACGTCAGAAGActtccagctaatttaaataaggTAGAAAAGGCATCTGCATGAAAATTTAAAATGATCAACCTGAAAGCTCCAGTCGCCTGTGACGTCATTATCCTGACAGACAATTCTGCTGCAGAGGCTTTTATATGTAAAGCCCCtcgtatatacagtacatacacccACTGATTCAAGGCAGAGAATCAACCACACAGAAACCATGTGGTTATTTTCTGCATCCATGATTGCAATTGCGCGAGTAAAGTGATTGCGAGTTCGCTATTAATCTCAGTCTATATTTATCAAACAAATCTGCGTCATCGGCGTCTGTGTCATAAGCGGGAACTGCTGCATGGTTAATACAGGACAATTACAATACAATTAGGTGCTATTTATGTGTGACGCAGGCCTCCGCTGGAAAGCGGGAAGAAAATGAGTCAGACAACATCTGTGAGCCGTAAGTCATTCTTCCAATCTGTAATCATGGAGTTAAATATTTAGTGTATCAAATGCATTTTAATATCTTACAAAAACAGGACGACCCCTGTGTTGGCCATGGCGTATGCCAGTCCTAGTATTCCACTTCCCATGATCGCATTGCCCAAGTTGAAGACCGACATCCCAAACGAGGTTTTCCCCTCAAACTATGACAGAAGCAGGACAGAAGAGAGGAATAAACATGTTAGATAATCTGATAATACATGCAGGTACTGCCTATATGAACTGTATATATGACACCACTGAGAAAGGTCGATTGGCTGTGTTTTACATCTGTAAAGTGAGTGGTCTTCTTTTCCTCCATGCCTGATAAGAACTCCTGGCTCTCTGGGAGGTTGGCCTCTGCATTCTCAGTTCTGTGGGGATTTCACCAGCCTCTGCAGGTGGTGTTATGGCCAATGCTGTGATCTCCTCCCCGGGCTCATGGCCTTTCCCATTCGGGATAGCGTTCCCTTCAGCAGTTTCCACAGTATCGGCTGGTTTATCCTCACTCATATCTGCTCTGGTGCCTCGGTGTGTATGTAATGAGTCTGTTGAAATGTGTAAATATTCAAGGCTGTGGTTCTAGTCGAGGTTGTATTTTCTTCCTGTGATCAGAGAAGTACCCGTGTCCTCATCCAACTCCAAATATCACCACACAGATCTTGCCTCCGCTTGCAGTGTCTTCCAGCCTCTGTCCCGCTACGTCCGTCCGCCTTCCCTCCAAACTGCGTTCatgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52514 lncRNA upstream 7351 16503438 ~ 16510185 (+) True G39113
TU52459 lncRNA upstream 265811 16235014 ~ 16251725 (+) True G39076
TU52421 lncRNA upstream 321752 16195379 ~ 16195784 (+) True G39052
TU52400 lncRNA upstream 359174 16156713 ~ 16158362 (+) False LOC120557902
TU52544 lncRNA downstream 9104 16552684 ~ 16556205 (+) True G39134
TU52557 lncRNA downstream 35505 16579085 ~ 16579722 (+) True G39143
TU52617 lncRNA downstream 238831 16782411 ~ 16782618 (+) True G39195
TU52618 lncRNA downstream 241168 16784748 ~ 16785065 (+) True G39196
TU52619 lncRNA downstream 242251 16785831 ~ 16786051 (+) True G39197
XM_039798001.1 mRNA upstream 350398 16161960 ~ 16167138 (+) True arpc4
XM_039798595.1 mRNA upstream 360027 16149125 ~ 16157509 (+) False LOC120557902
XM_039796384.1 mRNA upstream 457206 16049678 ~ 16060330 (+) True eefsec
XM_039798371.1 mRNA upstream 476323 16039813 ~ 16041213 (+) True mustn1a
XM_039798370.1 mRNA upstream 478262 16035974 ~ 16039274 (+) True rft1
XM_039796553.1 mRNA downstream 19285 16562865 ~ 16566395 (+) True emc3
XM_039796552.1 mRNA downstream 23121 16566701 ~ 16578215 (+) True usp4
XM_039796555.1 mRNA downstream 40832 16584412 ~ 16605415 (+) False fancd2
XM_039796556.1 mRNA downstream 41022 16584602 ~ 16605415 (+) True fancd2
XM_039796558.1 mRNA downstream 41022 16584602 ~ 16605415 (+) False fancd2
TU52503 other upstream 82307 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 467106 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 551429 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 869685 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 1643077 14865059 ~ 14874459 (+) True calcoco1b
TU52801 other downstream 568533 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 649641 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 649641 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 649641 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 649641 17193221 ~ 17198217 (+) False srsf3b

Expression Profile