RNA id: TU52617


Basic Information

Item Value
RNA id TU52617
length 208
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G39195
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16782411 ~ 16782618 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttgttatctaAAGTAACACTGCATAATCATACTTTAGTGTGAGGGATCCTCTGGTGCACacgtcaaactcaaggcccgcgggccaaatccagcccctatatacatttaggttcacaatacattttggcccacctactttttgtcacttttcacaatgttttttttgacatttttttatgctttttccaaacgttttcgacatttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52557 lncRNA upstream 202689 16579085 ~ 16579722 (+) True G39143
TU52544 lncRNA upstream 226206 16552684 ~ 16556205 (+) True G39134
TU52517 lncRNA upstream 260074 16517536 ~ 16522337 (+) False G39116
TU52514 lncRNA upstream 272226 16503438 ~ 16510185 (+) True G39113
TU52459 lncRNA upstream 530686 16235014 ~ 16251725 (+) True G39076
TU52618 lncRNA downstream 2130 16784748 ~ 16785065 (+) True G39196
TU52619 lncRNA downstream 3213 16785831 ~ 16786051 (+) True G39197
TU52633 lncRNA downstream 36128 16818746 ~ 16823256 (+) True G39210
TU52709 lncRNA downstream 185238 16967856 ~ 17046696 (+) True LOC120556687
TU52742 lncRNA downstream 265317 17047935 ~ 17048365 (+) True G39302
XM_039798912.1 mRNA upstream 40899 16738036 ~ 16741512 (+) True cav3
XM_039798588.1 mRNA upstream 47105 16733386 ~ 16735306 (+) True LOC120557897
XM_039796316.1 mRNA upstream 52395 16724159 ~ 16730016 (+) True gpr61l
XM_039798960.1 mRNA upstream 59594 16718280 ~ 16722817 (+) True parp3
XM_039796275.1 mRNA upstream 66184 16683808 ~ 16716227 (+) True grm2a
XM_039797180.1 mRNA downstream 114452 16897070 ~ 16906824 (+) False thumpd3
XM_039797181.1 mRNA downstream 114494 16897112 ~ 16906824 (+) False thumpd3
XM_039797183.1 mRNA downstream 114562 16897180 ~ 16906824 (+) True thumpd3
XM_039797184.1 mRNA downstream 125224 16907842 ~ 16916563 (+) True LOC120557149
XM_039798758.1 mRNA downstream 135203 16917821 ~ 16962625 (+) True LOC120557990
TU52524 other upstream 238831 16517536 ~ 16543580 (+) True G39116
TU52503 other upstream 347182 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 731981 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 816304 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 1134560 15645511 ~ 15647851 (+) True G38834
TU52801 other downstream 329495 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 410603 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 410603 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 410603 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 410603 17193221 ~ 17198217 (+) False srsf3b

Expression Profile