RNA id: TU52619


Basic Information

Item Value
RNA id TU52619
length 221
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G39197
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16785831 ~ 16786051 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCCAGGTTATTGCTCTGCTTATATTCCTGAAACAAATTTAAAGTCTACGGTGAAATGGAACTCTCTTCCTCCAGAAAGCTATCCGACACTGAGATATGGACATTTCTATTAGCATTAGCACCGTCTCAAGCTTGCCTCTGGGTAATTCCTGGATCAAGAGAAATTCGTCACACCATTGGCAGAATCTTGCAACTGTTTTCAGGGGACAAAAAGATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52618 lncRNA upstream 766 16784748 ~ 16785065 (+) True G39196
TU52617 lncRNA upstream 3213 16782411 ~ 16782618 (+) True G39195
TU52557 lncRNA upstream 206109 16579085 ~ 16579722 (+) True G39143
TU52544 lncRNA upstream 229626 16552684 ~ 16556205 (+) True G39134
TU52517 lncRNA upstream 263494 16517536 ~ 16522337 (+) False G39116
TU52633 lncRNA downstream 32695 16818746 ~ 16823256 (+) True G39210
TU52709 lncRNA downstream 181805 16967856 ~ 17046696 (+) True LOC120556687
TU52742 lncRNA downstream 261884 17047935 ~ 17048365 (+) True G39302
TU52745 lncRNA downstream 263746 17049797 ~ 17053951 (+) True G39304
TU52744 lncRNA downstream 264608 17050659 ~ 17053951 (+) False G39304
XM_039798912.1 mRNA upstream 44319 16738036 ~ 16741512 (+) True cav3
XM_039798588.1 mRNA upstream 50525 16733386 ~ 16735306 (+) True LOC120557897
XM_039796316.1 mRNA upstream 55815 16724159 ~ 16730016 (+) True gpr61l
XM_039798960.1 mRNA upstream 63014 16718280 ~ 16722817 (+) True parp3
XM_039796276.1 mRNA upstream 70031 16683808 ~ 16715800 (+) False grm2a
XM_039797180.1 mRNA downstream 111019 16897070 ~ 16906824 (+) False thumpd3
XM_039797181.1 mRNA downstream 111061 16897112 ~ 16906824 (+) False thumpd3
XM_039797183.1 mRNA downstream 111129 16897180 ~ 16906824 (+) True thumpd3
XM_039797184.1 mRNA downstream 121791 16907842 ~ 16916563 (+) True LOC120557149
XM_039798758.1 mRNA downstream 131770 16917821 ~ 16962625 (+) True LOC120557990
TU52524 other upstream 242251 16517536 ~ 16543580 (+) True G39116
TU52503 other upstream 350602 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 735401 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 819724 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 1137980 15645511 ~ 15647851 (+) True G38834
TU52801 other downstream 326062 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 407170 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 407170 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 407170 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 407170 17193221 ~ 17198217 (+) False srsf3b

Expression Profile