RNA id: TU52633


Basic Information

Item Value
RNA id TU52633
length 725
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G39210
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16818746 ~ 16823256 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTAGACATGCAAGGCTAGGTGGTAAATCTGCTTCAATCCGTAGGGCCATCtccaaaattctgaaccacccTTTTAAACAACAAACGCAGCTAGGCCTTTTTAAGAAAgaaaattgtttttgtttcagtcaATCAATCTGTGATCAGAAATCAAAGTCCCGCTCGAAGGGATGCAAGACGCCTCTTACGTCATTTGACGACTTCCGCTGAGTTGGAGGTTCTGTAAATAAACAGATTTGAGCATTAAGGCTACATTAGTTTACATAGTACATAATTTTTTCTCCTAAATTTACGACTTTACGAACAGGAAAGCTAAGTGTAGAAAATGAGTATTCCAGAACAACTGACTAACAAGTGGTGCCTCTACAACAGCCTTGCTACTCTTCATTTCAGCTGATAAGGACACAAGTTATCCTGGATGACAAGTTCACCATCTCCATCTTCTCCTGTCTACTCCAGTCAGCTGGCTCCACCACACGGATCCCCTCCCTCGGCACCCTGCTCCAGCCTCTCCTCAGTCCTTCTGCTCTCCAGTCCCAGCCTCTCTCCCTCGGCTCCTCGGCTACGGCTTCCCCGCGCTCCCCTGAGTCACCAGCCCCAGTGTCTCTCCCACGGCTCCCCGGTCACAGCTCCCCTGGATATCTCCACCCTCCAGTTCCTCTAGCCTCCCCGCAGCTGCTCCCCCATTCCCGGCGTCTGCCTCCCCACTTCCCCTTTCCTTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52619 lncRNA upstream 32695 16785831 ~ 16786051 (+) True G39197
TU52618 lncRNA upstream 33681 16784748 ~ 16785065 (+) True G39196
TU52617 lncRNA upstream 36128 16782411 ~ 16782618 (+) True G39195
TU52557 lncRNA upstream 239024 16579085 ~ 16579722 (+) True G39143
TU52544 lncRNA upstream 262541 16552684 ~ 16556205 (+) True G39134
TU52709 lncRNA downstream 144600 16967856 ~ 17046696 (+) True LOC120556687
TU52742 lncRNA downstream 224679 17047935 ~ 17048365 (+) True G39302
TU52745 lncRNA downstream 226541 17049797 ~ 17053951 (+) True G39304
TU52744 lncRNA downstream 227403 17050659 ~ 17053951 (+) False G39304
TU52750 lncRNA downstream 257410 17080666 ~ 17082576 (+) True G39308
XM_039798912.1 mRNA upstream 77234 16738036 ~ 16741512 (+) True cav3
XM_039798588.1 mRNA upstream 83440 16733386 ~ 16735306 (+) True LOC120557897
XM_039796316.1 mRNA upstream 88730 16724159 ~ 16730016 (+) True gpr61l
XM_039798960.1 mRNA upstream 95929 16718280 ~ 16722817 (+) True parp3
XM_039796276.1 mRNA upstream 102946 16683808 ~ 16715800 (+) False grm2a
XM_039797180.1 mRNA downstream 73814 16897070 ~ 16906824 (+) False thumpd3
XM_039797181.1 mRNA downstream 73856 16897112 ~ 16906824 (+) False thumpd3
XM_039797183.1 mRNA downstream 73924 16897180 ~ 16906824 (+) True thumpd3
XM_039797184.1 mRNA downstream 84586 16907842 ~ 16916563 (+) True LOC120557149
XM_039798758.1 mRNA downstream 94565 16917821 ~ 16962625 (+) True LOC120557990
TU52524 other upstream 275166 16517536 ~ 16543580 (+) True G39116
TU52503 other upstream 383517 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 768316 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 852639 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 1170895 15645511 ~ 15647851 (+) True G38834
TU52801 other downstream 288857 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 369965 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 369965 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 369965 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 369965 17193221 ~ 17198217 (+) False srsf3b

Expression Profile