RNA id: XM_039796363.1


Basic Information

Item Value
RNA id XM_039796363.1
length 1602
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC120556687
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16964617 ~ 17046696 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCGCGTCCTAATccggcacacacacatattatataaAAATGGCCATCCAATCCCGCgtcacacagagaaacaactCTAGGCGGTCTGCTTGTGTGGCTCACTAACAGGACTGGATAGGTGCATCATGATTGTTATAGTGGACCTGCTGTTGATGCTTATCCACCTGAGCTACTCCATCCTGCATGCCGTCATCCAGACTTTCCTCAGGCCAAGGCTCAAGTGCATTGACGGGGAGCTCTGTCTGATAACAGGGGCCGGGGGCGCGCTGGGCCGGCTGTTTGCCCAGGAGTTTGCCAAAGAAGGAGCACACCTAGTGCTGTGGGATTGCAACACGGCTGCCAACGAGCAGACCGCCAAGCTGGCGCGGGAGCTGGGAGTTCAGGTGCACACATACACGGTggacctgaccaagcgtcagaaCATCTATGAGACGGCGGACAGGGTGAGAGCTGAAGTCGGGGAAGTCTCCATTCTGGTCAACAACGCTGGCGTGGTGGCCGGACGGAGGCTGCTGGACTGTCCTGACGGGCTTTTGGAGAGGACTCTGCTGGTGAACTGCCACGCACTGTTTTGGATGACAAAGGCCTTCCTGCCTCAGATGAAAGCAAAGAACCATGGTCACATTGTAACCATTGCTAGTGCTCTTGGACTATTCAGCACTGCCTGTGTAGAGGATTACTGTGCCAGTAAATTTGGAGCTGTGGGATTCCACGAGTCACTGACGCACGAGTTGCTCGCAGAGGACATGGATGGCATCAAAACCACTTTAGTCTGCCCTTATATTGTAGACACAGGGATGTTTGCAGGCTGTGAAATCCGGAAGGAGCTTCGCAGTTTAATTCCACCCCTGGAGCCCCTATACACCGTACAGCAGTCAATGAAAGCTATTTTAGCTGAACAGCAAATGATCTGCATTCCTCGCCTTATGTACATTGCCTTCCTAACACGAGCATTGCTCCCATGGGAGGCAAATGTAGCAACATATCGCTTCATGGGAGGTGACAAATGCATGCTACCCTTCATCAAGAACGTTGAACTGAAGACCTCCAATGGCCACATCAAATCCTAAGACTTCTCGGTCAGCCTGTCTTATAACCTTTTGGACCAATGCAATCGCCAAAGGCTCACACTGTATGTTCTTAATACATACATTTGTCATCTAAAGGGAGAGCCCAGTATCTGCATGTTTAACAATGGCCTGAAGGGTAACTTTATTCACAGCCATTATTGCATACATGTTTGGTGATTTCTGCTTATAAATAACTATAACTGGATCTGAAGGGCCACCAGGGTTTGTTTAATGAAAAGGAAATTCCTCCTTATTTATAAAGTTTTTATTTAGATTTATCTCACCACTGGAGGCCAACATTCACCAACCAAGATAAATTCATCAAAATACTGCTTATAGAAAAGAGGCTGCAATGATAACAGATCTATACAAGGGCCTCTTTTTATTCACATTAACAAACAGTGCAGAAACAAAGACAATAAGAAATTTAAGGGAAacatgcaacagaaaaatacTATGCATTATGTTTGAGCCACAGACTACAGTCTCCATAACTGTAAAAAGGAATTCaatcatacaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52633 lncRNA upstream 141361 16818746 ~ 16823256 (+) True G39210
TU52619 lncRNA upstream 178566 16785831 ~ 16786051 (+) True G39197
TU52618 lncRNA upstream 179552 16784748 ~ 16785065 (+) True G39196
TU52617 lncRNA upstream 181999 16782411 ~ 16782618 (+) True G39195
TU52557 lncRNA upstream 384895 16579085 ~ 16579722 (+) True G39143
TU52742 lncRNA downstream 79831 17047935 ~ 17048365 (+) True G39302
TU52745 lncRNA downstream 81693 17049797 ~ 17053951 (+) True G39304
TU52744 lncRNA downstream 82555 17050659 ~ 17053951 (+) False G39304
TU52750 lncRNA downstream 112562 17080666 ~ 17082576 (+) True G39308
TU52816 lncRNA downstream 189799 17157903 ~ 17159236 (+) True G39358
XM_039798758.1 mRNA upstream 1992 16917821 ~ 16962625 (+) True LOC120557990
XM_039797184.1 mRNA upstream 48054 16907842 ~ 16916563 (+) True LOC120557149
XM_039797180.1 mRNA upstream 57793 16897070 ~ 16906824 (+) False thumpd3
XM_039797181.1 mRNA upstream 57793 16897112 ~ 16906824 (+) False thumpd3
XM_039797183.1 mRNA upstream 57793 16897180 ~ 16906824 (+) True thumpd3
XM_039796365.1 mRNA downstream 33070 17001174 ~ 17004437 (+) True wdr77
XM_039798841.1 mRNA downstream 50846 17018950 ~ 17020740 (+) True LOC120558021
XM_039798839.1 mRNA downstream 59605 17027709 ~ 17032694 (+) True irf6
XM_039798840.1 mRNA downstream 59605 17027709 ~ 17032694 (+) False irf6
XM_039797450.1 mRNA downstream 66615 17034719 ~ 17042813 (+) True eps8l3a
TU52524 other upstream 421037 16517536 ~ 16543580 (+) True G39116
TU52503 other upstream 529388 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 914187 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 998510 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 1316766 15645511 ~ 15647851 (+) True G38834
TU52801 other downstream 144009 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 225117 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 225117 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 225117 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 225117 17193221 ~ 17198217 (+) False srsf3b

Expression Profile