RNA id: TU52744


Basic Information

Item Value
RNA id TU52744
length 2767
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G39304
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17049797 ~ 17053951 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCTCAACAGTAAAAGAATAGGTTTGGTGTGTGCATGATATACCAGCATCTACAGGGGTCTCTGCTATATCGTCATAGTCTGCCAGATCCAGAGGCTTCATCCCGAGGTCCTGCAGGGTGTTACTTGTGGTCTTACAAAAGGACTGCATGGATCGCTTTATGTACTTCTCCCGGATGAATAATGCCTTCACCACACACTTTGCAGCATCTACCAAGTCAGTGAAGGGCACCCCGCACTTTTCCTCCCCAGATATTGAGACCCGCTGGTACTCTTTCTCCATTGGCATTTTCCTCTCCCTAAAGCCATCATCAACAGAGTCCACGCACGTCTCGTTCAATAACCTTAATTgatacagacagagaaaaggagagtTTAAAACAAGAGAAAGCTAGGCAGAGGCACAACAGAtaagacacacagagatggaAAACGTGGATATAAGCAAGAGCAGAAACGTAAATGAAGGAGAAGGCAATCCAGATACTATTGGTTTTATAAAGCAGCAGCCGCCAATATTTCAGTTAATGGTTTGAAACAACTGGTTtggaaagtattcagatcccTTTTACTTTAATCAAAATGCAACACTCCATAACCAAcaaggggattttttttttttctaaacaaaacaaatccaatTTTCTCATTTAAATAGACATTCAGACCTGTATTCAGTATTTTGTAGAAATATTATAAGCTGGGACTGATTGATCATTCTTCAAGTCTGTCCACAGGATTTCAGTGGTTCAGTTCTTGGGGTCTTGGTGAGACAAACTTCTTGCAGCACGGTATGTATGATTACCTTTCAAACCCACGTCACACATAGGGTAACCGCTAGAGAGATGTCTATGTACTGTATCTATATTATCAACTTCAATAGTTTATGTTATAACCTACAGAGCTGCCCAATAACCAGGACTGTAAGGATTTCTAGGAGTTCACAGGAGATTTCATTACCAAGAAAACAGAGGAAGTCAAATcaaaatcaacagaaaatgcaAATATAGACTTTAGACTTTTAAACTAAagagttttgtcttttttgagaGTAGAAGAACAAGATACCCATTTGTACATCTATCAAGTTACCAGCAGGGGGAAGATGTGGTCCATCTCATTATGCTGATAATCTGTCAGTGGTTCTGAAGATAAAAGTCCAGAGTTCCTAAATACTTTTAGACTAGACATTAATAAGTACATAGTAATGATGAATAATTAAACATTCAGGTACGCCATTCTAAGAATACAAGTAAAAAATAGATAAacttaaagaaaataaacaaccaAAGAGAAAATCACtaaacaaaacatacaaactGTAGCAGATCTCACTCACTCTAGGTCTGCAGCACTGTCGATTTTCATGAAGTCTTGTTTGGCGCGGAGCAAGATCTCTGGCTCAAGCCTTGGGGTGATATGCAGTGGTGCAGAATAGTTTGGGCAAGGCAGAGGGGCACCAGAGGTAGTGAGAAGAAATTAAGCACACAAAGGGAGAGAGACCAGAGATATGCAAcagcacacacatgaacacacactcaaacaagcGCGCgggcgcgcgcgcacacactcacacacacacacacactatagtaGGTAATAAATGATCGAGGAGATTtgcacaaacagaaaaaaaaccatCTGTTAAAAGTGGTACACACCCTAATTGTTAAACAGGGGCTTGCAGGGTGGAGTGTCAGATAACCACCCAAACGATCGGCTTAGTGGTGCAGATAGGGTGAACCCTGGCAACCAAGACAGAAACCACCTCCTTATAAAAGATTGAACACGGTGCTGGCTAGCCCAGTCAGCTGATTGCTGGGGGTTAGTTAGCCCACAAACTGGCAAAGTGGAAGCTGATAAGCATGACATACATGGGTAAAAGCAAgagtgtgtgtaaaatgtgggggaggggagagctctgtctgtctgagatactgttaatagtttatttaactggctttgtgtgtgtgtggtgtgtgtttgcatttccTCACTTAATGTCCTGGCTGATTTGCCTCTCTAGACGGTGCCGCCGCTCTTCCAGCTGTTCGATGGGGCTGTCCTCTGGGAACTCATAAGGAGCGCTTCGCATCTCGCTCTCTGCCATGCTGCGTGTGAACAGCTCCTTGTGCAAACATAAGTTATACCatttatgatgtcataaaacaggaaaacatgTTCAACTTCCATGCACCTGTGGACTCTGGGGCTCACACAAAATCACCTGCTTCATTTACCTTCAAATAAAGCCATGAAAGGTCAAGGATGATATTGAACTCAAAATAAGAAAGCTTTGATGAACATGTGACATAGTTTCAAATGTTATTGCACAATTTTATGGCAATATTCTTGATTTTACAGGCAGGCAGGTTAATATTACTTGTGGGTTCATTCAGTAAATCATCAAAAGCTAAAGCTGAAATTATTCTCCAGGCAGAAGCCATTGAGACACTATACAGTTGATAATTGGTTCACTATTAaggtttaaaagattttcaaactTTCCATCCTATATTCACATAACTGGCAAATTCCATATTCTAACAAATGCCAGTAACAGATGATTAAAATGTCTGAATATTTAGATAAGCTGTACCTAAAAGAACTAATGTAATCGGTGTGGCTTTGAATTCTTACCTCAGCAATCTCTTTGTACTTTTCTTCCATGGATGTTCGCAGGTCGATTgtgtagtgtgagagagaaacaggcGTCCCTGGAAGAGATCTCTGGGGCTTGAGGGGCTTGGGACCAGATGCGCTACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52742 lncRNA upstream 2294 17047935 ~ 17048365 (+) True G39302
TU52709 lncRNA upstream 3963 16967856 ~ 17046696 (+) True LOC120556687
TU52633 lncRNA upstream 227403 16818746 ~ 16823256 (+) True G39210
TU52619 lncRNA upstream 264608 16785831 ~ 16786051 (+) True G39197
TU52618 lncRNA upstream 265594 16784748 ~ 16785065 (+) True G39196
TU52750 lncRNA downstream 26715 17080666 ~ 17082576 (+) True G39308
TU52816 lncRNA downstream 103952 17157903 ~ 17159236 (+) True G39358
TU52918 lncRNA downstream 234488 17288439 ~ 17289516 (+) True G39427
TU52924 lncRNA downstream 244041 17297992 ~ 17298192 (+) True G39433
TU52930 lncRNA downstream 253104 17307055 ~ 17307707 (+) True G39437
XM_039797450.1 mRNA upstream 7846 17034719 ~ 17042813 (+) True eps8l3a
XM_039797451.1 mRNA upstream 7846 17034720 ~ 17042813 (+) False eps8l3a
XM_039798839.1 mRNA upstream 17965 17027709 ~ 17032694 (+) True irf6
XM_039798840.1 mRNA upstream 17965 17027709 ~ 17032694 (+) False irf6
XM_039798841.1 mRNA upstream 29919 17018950 ~ 17020740 (+) True LOC120558021
XM_039798921.1 mRNA downstream 43746 17097697 ~ 17102777 (+) True LOC120558072
XM_039798075.1 mRNA downstream 73444 17127395 ~ 17144727 (+) True LOC120557584
XM_039798081.1 mRNA downstream 139200 17193151 ~ 17197749 (+) False srsf3b
XM_039798083.1 mRNA downstream 139200 17193151 ~ 17196040 (+) False srsf3b
XM_039798082.1 mRNA downstream 139201 17193152 ~ 17197749 (+) False srsf3b
TU52524 other upstream 507079 16517536 ~ 16543580 (+) True G39116
TU52503 other upstream 615430 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 1000229 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 1084552 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 1402808 15645511 ~ 15647851 (+) True G38834
TU52801 other downstream 58162 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 139270 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 139270 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 139270 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 139270 17193221 ~ 17198217 (+) False srsf3b

Expression Profile