RNA id: TU52816


Basic Information

Item Value
RNA id TU52816
length 1081
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G39358
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17157903 ~ 17159236 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAAATAAGTTTCACAATTTACATGTATTCTTATTTCCTTAacctttataataaaaaCAGCCTGGtggtcagtgaaggtctgaATGGTTGCCTCCATGGTCCCAGAGTAAAGGTGCGTAGGCAGTACTTAGGGGAGAAACTCAGAATGCAAATGCAATTTAAATCATTTGCAAAATGCAGCACAACAACAAAGAGTAAGTCAAGTCAGACGTTTGTCCCCCTTCAGGTGATTACTATTAAAAAGTAAAAcctgtttttatttgtacaCAGTAATTATGACTAAAAAGCCTCAACCTCATTCCTTTTCATCTCTCTGAAGAAGATACACTAGGGAATCTTATATTTATTAACATCCCAAATGTGCTGCCTCAACACCTCTGTTATTCTTAACAGTAAATACATACAATGTATTCCAAATAAATCTCTTTAAAATTAAGAATAAACTTCATGTAGTGGTTCAAGGTAAAACTTACAGGACGTCTTTAGCAGGTAAGAGGCACACAGAGCAAATACCTGTATATGTAAAGGTAGGGGTTGAGTTTAGGTCCACATGTGGAGCAAGATTTAGCACTGAATTATTCGTCAGctgtttcattaaaaaaaaactgtgggtGGCATTAGTGTGGGGAAGTCTCCATAGTTCGTCACGTAAACGTAACTGTAACGGGATGATTGAAAATCTACACCTGGGCAACTTTAGAGAGCTAAATCCATCCGTCAGCTTCAGTCTGGACAGAACACCTAACGTACTGCTGAGAGCACTGCTGGTCTGTTGGTCTCTTGTCTGAACTCCTGATTGAAACTTTTGTTGTTGATGAAAGTCGTTTAGATTCTCACTGTAGCAGTTCTTCCCAGGAAATGGGTTTGGAGAAGACCTCTCGTTCCAGCCAAAGGTCGTAATTCATTTGGAAGTCCTCGGGCAGGTCCACCCGCTGTCCCAGGACACTTTGCAGACAGTTGTCCACAGGCAGGAAGTCCGGGTTGCTGTGGCTCTTGTCGTAGCGGCGACTATTGAAGCGCTCGATGTTGGCCCGCAGAGCACACTCCTCGGCCTGGAAGTCCCAGGGACGAGCGTCCAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52750 lncRNA upstream 75327 17080666 ~ 17082576 (+) True G39308
TU52745 lncRNA upstream 103952 17049797 ~ 17053951 (+) True G39304
TU52744 lncRNA upstream 103952 17050659 ~ 17053951 (+) False G39304
TU52742 lncRNA upstream 109538 17047935 ~ 17048365 (+) True G39302
TU52709 lncRNA upstream 111207 16967856 ~ 17046696 (+) True LOC120556687
TU52918 lncRNA downstream 129203 17288439 ~ 17289516 (+) True G39427
TU52924 lncRNA downstream 138756 17297992 ~ 17298192 (+) True G39433
TU52930 lncRNA downstream 147819 17307055 ~ 17307707 (+) True G39437
TU52926 lncRNA downstream 192470 17351706 ~ 17360942 (+) False G39434
TU52925 lncRNA downstream 195921 17355157 ~ 17357586 (+) True G39434
XM_039798075.1 mRNA upstream 13176 17127395 ~ 17144727 (+) True LOC120557584
XM_039798921.1 mRNA upstream 55126 17097697 ~ 17102777 (+) True LOC120558072
XM_039797450.1 mRNA upstream 115090 17034719 ~ 17042813 (+) True eps8l3a
XM_039797451.1 mRNA upstream 115090 17034720 ~ 17042813 (+) False eps8l3a
XM_039798839.1 mRNA upstream 125209 17027709 ~ 17032694 (+) True irf6
XM_039798081.1 mRNA downstream 33915 17193151 ~ 17197749 (+) False srsf3b
XM_039798083.1 mRNA downstream 33915 17193151 ~ 17196040 (+) False srsf3b
XM_039798082.1 mRNA downstream 33916 17193152 ~ 17197749 (+) False srsf3b
XM_039798085.1 mRNA downstream 44415 17203651 ~ 17208659 (+) True cdkn1a
XM_039798084.1 mRNA downstream 46913 17206149 ~ 17208659 (+) False cdkn1a
TU52801 other upstream 38013 17112113 ~ 17119890 (+) True G39351
TU52524 other upstream 614323 16517536 ~ 16543580 (+) True G39116
TU52503 other upstream 722674 16433238 ~ 16435229 (+) True G39104
TU52330 other upstream 1107473 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 1191796 15965414 ~ 15966107 (+) False ccdc174
TU52832 other downstream 33985 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 33985 17193221 ~ 17198217 (+) False srsf3b
TU52834 other downstream 33985 17193221 ~ 17198217 (+) False srsf3b
TU52836 other downstream 33985 17193221 ~ 17198217 (+) False srsf3b
TU52841 other downstream 33985 17193221 ~ 17198217 (+) False srsf3b

Expression Profile