RNA id: TU52926



Basic Information


Item Value
RNA id TU52926
length 647
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G39434
representative False

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17351706 ~ 17395822 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtggggttgACAACGTGGGTGATTATAACAGTCCATCCCCATGTTTGATAAGTCTACATTTCCACTCAGCCCCCACAGGCTGACATGCATGAGGACAGAGTGGAATAAAGAGTAAAAACCTAACACAAACCGAAGGCCGCCCTGCTGTTCACACCGTTTACCCAGAAGAATGACAGTTATATACCAACATTAATAATTTTATACAAATATATCAGGGGGGCGGGTGTCATAAACAAAAGTAGGGGCTTGAAATAAATTTGATAAACATAATAATGACAGCCCCATCGAGCCTACATCACCTACAGCACAGTCTGTGCCCGTTTCCTCGACACAGAGGAAGAGCCGGGCCAAAATCGCTCGTTTTAAACTGACCGAAGATACATCAGCTGTGAGAACATCAGGGATTATTACTACGATGACCCTCACACTGTAAGATTATCATTAACCGTGGTAATACTATCATTATATTCATTACattggagagaagagagaagataGGGGTGAAGCGAGACAGAGGGAGCGTGAGTGAATGGCTTCATGGCAAATGAGATGCATGAAAACAAaaccagacaaaaaaaaaaaaaaaaaaaaagaaaaaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU52930 lncRNA upstream 43999 17307055 ~ 17307707 (+) True G39437
TU52924 lncRNA upstream 53514 17297992 ~ 17298192 (+) True G39433
TU52918 lncRNA upstream 62190 17288439 ~ 17289516 (+) True G39427
TU52816 lncRNA upstream 192470 17157903 ~ 17159236 (+) True G39358
TU52750 lncRNA upstream 269130 17080666 ~ 17082576 (+) True G39308
TU52941 lncRNA downstream 10594 17371536 ~ 17377560 (+) False LOC120557637
TU52985 lncRNA downstream 100922 17461864 ~ 17462250 (+) True G39486
TU52983 lncRNA downstream 102596 17463538 ~ 17464778 (+) True G39484
TU52988 lncRNA downstream 105145 17466087 ~ 17466596 (+) True G39489
TU53012 lncRNA downstream 139121 17500063 ~ 17501224 (+) True G39509
XM_039798096.1 mRNA upstream 67414 17258191 ~ 17284292 (+) True dstyk
XM_039798139.1 mRNA upstream 111802 17235220 ~ 17239904 (+) True ccnd3
XM_039798122.1 mRNA upstream 116948 17229640 ~ 17234758 (+) True bysl
XM_039798114.1 mRNA upstream 135549 17209900 ~ 17216157 (+) False tmcc2
XM_039798166.1 mRNA downstream 10541 17371483 ~ 17377553 (+) True LOC120557637
XM_039798152.1 mRNA downstream 17237 17378179 ~ 17385774 (+) False nbl1
XM_039798153.1 mRNA downstream 19050 17379992 ~ 17385774 (+) True nbl1
XM_039798159.1 mRNA downstream 29595 17390537 ~ 17397524 (+) True LOC120557631
XM_039798116.1 mRNA downstream 65140 17426082 ~ 17436565 (+) True LOC120557606
TU52833 other upstream 153489 17193221 ~ 17198217 (+) False srsf3b
TU53107 other downstream 246988 17607930 ~ 17609216 (+) True G39581
XR_005639081.1 other downstream 532351 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 543756 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 828673 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 828673 18189615 ~ 18193926 (+) False tusc2b

Expression Profile