RNA id: TU52927



Basic Information


Item Value
RNA id TU52927
length 270
lncRNA type read_through
GC content 0.39
exon number 2
gene id G39434
representative False

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17351706 ~ 17395822 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTAGAGCAgctttttactgtttttattgttgctgGAGGCTCTAATACAATATGAATCATaagctttacaaaataaaacaaaaatacaacaaaaagatTCCCCTCCAAAATGGAAACAGGCAAAGGTTTCCACTGAGACACAAACTGACCCCCAACAAAGACATAGTAggtgaggagagagaaaagttgAATAAGCTGAACACAGGGGAGGCAAACTGTCATGTtatacagagtgtgtgtgtgtgtgtGTGTGTTTCTGTggctttgtgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU52930 lncRNA upstream 47450 17307055 ~ 17307707 (+) True G39437
TU52924 lncRNA upstream 56965 17297992 ~ 17298192 (+) True G39433
TU52918 lncRNA upstream 65641 17288439 ~ 17289516 (+) True G39427
TU52816 lncRNA upstream 195921 17157903 ~ 17159236 (+) True G39358
TU52750 lncRNA upstream 272581 17080666 ~ 17082576 (+) True G39308
TU52985 lncRNA downstream 66042 17461864 ~ 17462250 (+) True G39486
TU52983 lncRNA downstream 67716 17463538 ~ 17464778 (+) True G39484
TU52988 lncRNA downstream 70265 17466087 ~ 17466596 (+) True G39489
TU53012 lncRNA downstream 104241 17500063 ~ 17501224 (+) True G39509
TU53019 lncRNA downstream 115048 17510870 ~ 17512831 (+) True G39516
XM_039798096.1 mRNA upstream 70865 17258191 ~ 17284292 (+) True dstyk
XM_039798139.1 mRNA upstream 115253 17235220 ~ 17239904 (+) True ccnd3
XM_039798122.1 mRNA upstream 120399 17229640 ~ 17234758 (+) True bysl
XM_039798114.1 mRNA upstream 139000 17209900 ~ 17216157 (+) False tmcc2
XM_039798116.1 mRNA downstream 30260 17426082 ~ 17436565 (+) True LOC120557606
XM_039798117.1 mRNA downstream 30260 17426082 ~ 17436565 (+) False LOC120557606
XM_039798140.1 mRNA downstream 46829 17442651 ~ 17445993 (+) True LOC120557619
XM_039798135.1 mRNA downstream 53906 17449728 ~ 17452057 (+) True fndc10
XM_039798155.1 mRNA downstream 57000 17452822 ~ 17457991 (+) True ssu72
TU52833 other upstream 156940 17193221 ~ 17198217 (+) False srsf3b
TU53107 other downstream 212108 17607930 ~ 17609216 (+) True G39581
XR_005639081.1 other downstream 497471 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 508876 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 793793 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 793793 18189615 ~ 18193926 (+) False tusc2b

Expression Profile