RNA id: TU52983


Basic Information

Item Value
RNA id TU52983
length 1090
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G39484
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17463538 ~ 17464778 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCCATTTAATTATTTCAACAGAGACATTCCACTGTGCACAACACTTATATACTTACAGACACACAGTCTGGTTCCCATGTAAAGTACACTTACAAtgtacacattatatattaGAATCAATGAGTCTTTTGTGTTTTGTAAAGTTAATTGATTACCTGCTGAACTCATCTTCTGTCACAGACAAGTCAACAGACTTTTAGACTTAAACTGACAGACTAGTTTAAGAAGCAGGACGGGACATTCATCTTTCTAATCCAGGATGCCCCACTGAGCAAATCTACGACTCAAACTGGAGTTCCGTCTTTTGGAGGAGAAGATCCAATTTTGTCTTCCTTTTCCATCTTGCTCTCACTGTCAATGGGGGCAGCAGGCTGGGCTAAACTCTCTGCCTCTGTTGCAGCTTCTGCTTTGACAGCATCTTTACAGTCCTGTCCAGCTGGGGTGGCACTTTTGCCTTCTGCTGATTGGTCGTTGTCTGAAGGAGGTGTTATATTTTCACCTGCTTGTTTCGAATTTATCTCAAGAACTGGAGCGATCACCTCCTGAGCCTCAGGTGCCTCACTGAGGGGCAGAGTAAAGCCCATTTTCCCCCCGCTGCCTGTCCCTCCAGCTGTGGGAGGTGTAAGGCTCTTGGCCCGAGCCTCGTCCTCTCCATGCAGCCAGTCCATCTTCTGAAGGTGTTGCTTGACAGCGTCGTTAACTCGAGCATCAATCATGGCCTCTGTCAGGACGCCATCTTCAGAGGAATATGCTGCCGCCTGACATGCCCTCTGTCCATTTTGCTATTTCAGAGCACTTTTGACCATAGTCAAACTGTGCAAGCTTCATCCTCCTGCACACACGGACAGATGAGATGGGGACAAAGTTAAATTATTGTCCCACAGCCTGGATGCAATTTTCTTTCtgactttgttttgttgttgactGTGTTTTGGAGTTCAGTTCATTGCTTcctggcatgtgtgtgtaatgctcCCCACCTTTCAGCCTCCATCACACATGTGACCTCTGTGTAATTACGGATTTAACAGGACATGTGCAATCTGGGTAGAATTAATTTCAATATGAGGGGGGAGGATGTGCTGTGGG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52985 lncRNA upstream 1288 17461864 ~ 17462250 (+) True G39486
TU52927 lncRNA upstream 67716 17355157 ~ 17395822 (+) False G39434
TU52941 lncRNA upstream 85978 17371536 ~ 17377560 (+) False LOC120557637
TU52926 lncRNA upstream 102596 17351706 ~ 17360942 (+) False G39434
TU52925 lncRNA upstream 105952 17355157 ~ 17357586 (+) True G39434
TU52988 lncRNA downstream 1309 17466087 ~ 17466596 (+) True G39489
TU53012 lncRNA downstream 35285 17500063 ~ 17501224 (+) True G39509
TU53019 lncRNA downstream 46092 17510870 ~ 17512831 (+) True G39516
TU53025 lncRNA downstream 66744 17531522 ~ 17531924 (+) True G39522
TU53040 lncRNA downstream 124932 17589710 ~ 17590985 (+) True G39533
XM_039798165.1 mRNA upstream 816 17458924 ~ 17462722 (+) False LOC120557636
XM_039798164.1 mRNA upstream 816 17458977 ~ 17462722 (+) True LOC120557636
XM_039798155.1 mRNA upstream 5547 17452822 ~ 17457991 (+) True ssu72
XM_039798135.1 mRNA upstream 11481 17449728 ~ 17452057 (+) True fndc10
XM_039798140.1 mRNA upstream 17545 17442651 ~ 17445993 (+) True LOC120557619
XM_039798141.1 mRNA downstream 8535 17473313 ~ 17480092 (+) True sdhb
XM_039798160.1 mRNA downstream 16081 17480859 ~ 17486877 (+) True mfap2
XM_039798104.1 mRNA downstream 60237 17525015 ~ 17531451 (+) False fbxo42
XM_039798103.1 mRNA downstream 60285 17525063 ~ 17531451 (+) True fbxo42
XM_039798137.1 mRNA downstream 68287 17533065 ~ 17542138 (+) True slc25a34
TU52833 other upstream 265321 17193221 ~ 17198217 (+) False srsf3b
TU53107 other downstream 143152 17607930 ~ 17609216 (+) True G39581
XR_005639081.1 other downstream 428515 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 439920 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 724837 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 724837 18189615 ~ 18193926 (+) False tusc2b

Expression Profile