RNA id: TU52988


Basic Information

Item Value
RNA id TU52988
length 419
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G39489
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17466087 ~ 17466596 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTAGCGAAGAGAGTTTTGCCTGTGCCTGGAGGGCCGTACATGAGGATGTTCCTGTACAGGCCATTGTtctgccttgtgtttcttgttGCTATGGCGATGTCACGTACACGCTCTTCCAGGGTAGGCTAAGAGACAGAAAAATGCAACTTTAAAAATGCATGCTGGTTACATGCATTGTAAAGGCTTTGTTGTCCACTTACACTGAGCACAACTCCCTCGAGGGCATCCTGAGGTTTGCTCTTCAGCCGTTTGGCCATCTAAACTTGACTGGATGCTTGATTGCCTCTGCCACGGTGAATCGGGACGTTTCCCGCACCAGGGACGGCTTCCCGAGCCTGGCCTCGATGTAACGTCCCGCCACCGCTGTTGCATTTCGGGCCGAATAAACTCCCACAGCTAAAAGGGTCAGTCCTGCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52983 lncRNA upstream 1309 17463538 ~ 17464778 (+) True G39484
TU52985 lncRNA upstream 3837 17461864 ~ 17462250 (+) True G39486
TU52927 lncRNA upstream 70265 17355157 ~ 17395822 (+) False G39434
TU52941 lncRNA upstream 88527 17371536 ~ 17377560 (+) False LOC120557637
TU52926 lncRNA upstream 105145 17351706 ~ 17360942 (+) False G39434
TU53012 lncRNA downstream 33467 17500063 ~ 17501224 (+) True G39509
TU53019 lncRNA downstream 44274 17510870 ~ 17512831 (+) True G39516
TU53025 lncRNA downstream 64926 17531522 ~ 17531924 (+) True G39522
TU53040 lncRNA downstream 123114 17589710 ~ 17590985 (+) True G39533
TU53105 lncRNA downstream 139227 17605823 ~ 17606816 (+) True G39579
XM_039798165.1 mRNA upstream 3365 17458924 ~ 17462722 (+) False LOC120557636
XM_039798164.1 mRNA upstream 3365 17458977 ~ 17462722 (+) True LOC120557636
XM_039798155.1 mRNA upstream 8096 17452822 ~ 17457991 (+) True ssu72
XM_039798135.1 mRNA upstream 14030 17449728 ~ 17452057 (+) True fndc10
XM_039798140.1 mRNA upstream 20094 17442651 ~ 17445993 (+) True LOC120557619
XM_039798141.1 mRNA downstream 6717 17473313 ~ 17480092 (+) True sdhb
XM_039798160.1 mRNA downstream 14263 17480859 ~ 17486877 (+) True mfap2
XM_039798104.1 mRNA downstream 58419 17525015 ~ 17531451 (+) False fbxo42
XM_039798103.1 mRNA downstream 58467 17525063 ~ 17531451 (+) True fbxo42
XM_039798137.1 mRNA downstream 66469 17533065 ~ 17542138 (+) True slc25a34
TU52833 other upstream 267870 17193221 ~ 17198217 (+) False srsf3b
TU53107 other downstream 141334 17607930 ~ 17609216 (+) True G39581
XR_005639081.1 other downstream 426697 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 438102 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 723019 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 723019 18189615 ~ 18193926 (+) False tusc2b

Expression Profile