RNA id: TU53019


Basic Information

Item Value
RNA id TU53019
length 1797
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G39516
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17510870 ~ 17512831 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaGAAGACATAAGTTcatattttatacatttcaGATAATTTTCAGAAAGGCACTTAATCAAATACTCGACGCAAATTAGCAACAAGATTGAGGAAATTTCTATTTGGTAAAAGgcacattttttaaaagcaacaagACATATGAAGGCCATACACAAAAACAATCATGAACGAAATATGTTCAAACTTTGAATGACAGACAAAAAATGGCCAATCGGGACTTTTTTCCCAACACCATGATTACAAAAATCTGGGTATTTTTTTAAGGAAGGCTTAAGAGGTTTAACGTAAAACTAATCAAATATCAATATAGCTTTGCAAGATCTCTTGGAAATAATGCAACtgaaaaccaaacacacacacacacacacacactagttaaAGCTAAAGAAAACATTGATACTGTAATGGGTAAACTAACTTTCCCCAAATGGTAAAAACAACTATGAGATGAGTGGTGCTGGTGTAATGAGATAGCAGTATGATGGGAGCACGATGTTGTAAATCACAATCAAATCTGATTCTGGACAGACTAACAGTGACTAGGAATAgataatagaaataaaataagggAACATTTGATTTTAGGCAATGGATAGACGTTTTCATCTGGCTATTGTAATGAGAATCTGTCCTTTCAACCATCACCATCCACATTTGTCTTGAGGAGAGCACATTCTCCAACAATGATGATTTAGGAGTCTCTCCTGGCTTCTAAAATCAAACAAAGATCCCACTTCAAAAGCAGAGTGTGACACAAATAtaagattataaaaaaatatgtacatGTTTACGGTTTGTTTCTCCAGAGTGTGTGGTCTCTGCGGGCTATAGTTTATGTGAACATATTCTTTAAGTGCAGCCAGAACAAATGAGCCAGTCAAGTTTGCCAACAGTTCCTCTCTTTTAGTTTCTTTTTGCCACAATCATCCGGTCCATGGAATGTATGGAACCTGAGTATTTCTCACCACTCAACTAAACTGCACCCATCCTGATTTGACAGCATCTTTACTGGAGTGGAGCCTGCAGATGTGAAATCTCCCCACATGTCGGAGCTGGGTGGGGTTGCAGGGCCAGGGGACCCAAAGTCAAAAAGAGAGGCTGGATCTGGAGAATAACAATTATTGAAAGCATGAATACAGTTTAAATCATGTGAagatgttttacattttttttaatttttatttgatACAATAGCACGGGGATCACCAGTGTTAGCCTGTACAGCTGAGACTGTCTGCTCTCCCAGAGTGGGCGGTATGACACCTCCAACCTTCACGCCTGGTGGAGGTGGGAGTAGACCCCCACCCATTGGCCGGGGTTTGGCTCCACCTGCATCCTTCTTCTTGATGTTCTGTGATTGACAGAGTCATGAGAATATCTGAATATCTTTATGGTTTAATTAGTGGCTCTTTTCTTCATAGAATCTGTCAACGTTCAATGTAGTATTTATTCCTTTCAGTAATTCCTTTACATCGGTGATGTTGGAGTGACTCACCCCAATGCTGATCTTGATAGTCTGTCCCTCTTTGAAGCGAAGGTCCAGCTTAGGTGCTGTGCTCTCAGAAGCTTCCTGTTTTGCGAGCTCACCTTCTTGCTTTACCCACCTTTAGAAACAGTTTGAAAgcataataattattattaaaataatgttaatAGAGTGGGTCATTGCAGTAGCAAGATACagatgacaaaaacatcagtatTGTAAACACAACCATCTACAAAGGTTTCGTGTGTGGACTTGTTTTACACTCATTTAAGATGAAAAATTATTGATATGCACAATGGACAAATG

Function

GO: NA

KEGG:

id description
ko03020 RNA polymerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53012 lncRNA upstream 9646 17500063 ~ 17501224 (+) True G39509
TU52988 lncRNA upstream 44274 17466087 ~ 17466596 (+) True G39489
TU52983 lncRNA upstream 46092 17463538 ~ 17464778 (+) True G39484
TU52985 lncRNA upstream 48620 17461864 ~ 17462250 (+) True G39486
TU52927 lncRNA upstream 115048 17355157 ~ 17395822 (+) False G39434
TU53025 lncRNA downstream 18691 17531522 ~ 17531924 (+) True G39522
TU53040 lncRNA downstream 76879 17589710 ~ 17590985 (+) True G39533
TU53105 lncRNA downstream 92992 17605823 ~ 17606816 (+) True G39579
TU53106 lncRNA downstream 94134 17606965 ~ 17607514 (+) True G39580
TU53120 lncRNA downstream 107892 17620723 ~ 17622507 (+) True G39588
XM_039798160.1 mRNA upstream 23993 17480859 ~ 17486877 (+) True mfap2
XM_039798141.1 mRNA upstream 30778 17473313 ~ 17480092 (+) True sdhb
XM_039798165.1 mRNA upstream 48148 17458924 ~ 17462722 (+) False LOC120557636
XM_039798164.1 mRNA upstream 48148 17458977 ~ 17462722 (+) True LOC120557636
XM_039798155.1 mRNA upstream 52879 17452822 ~ 17457991 (+) True ssu72
XM_039798104.1 mRNA downstream 12184 17525015 ~ 17531451 (+) False fbxo42
XM_039798103.1 mRNA downstream 12232 17525063 ~ 17531451 (+) True fbxo42
XM_039798137.1 mRNA downstream 20234 17533065 ~ 17542138 (+) True slc25a34
XM_039798136.1 mRNA downstream 21249 17534080 ~ 17542138 (+) False slc25a34
XM_039798138.1 mRNA downstream 23275 17536106 ~ 17542138 (+) False slc25a34
TU52833 other upstream 312653 17193221 ~ 17198217 (+) False srsf3b
TU53107 other downstream 95099 17607930 ~ 17609216 (+) True G39581
XR_005639081.1 other downstream 380462 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 391867 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 676784 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 676784 18189615 ~ 18193926 (+) False tusc2b

Expression Profile