RNA id: TU53025


Basic Information

Item Value
RNA id TU53025
length 403
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G39522
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17531522 ~ 17531924 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggattagagagaacaggacattttttgttgttgttccccAAAAGATGATCAACCAAACAATAAcgcttttgtttttctgtgtcgTCCTCCTGTTAACTCTTGAAAGAGGAACTCTGTAAGAAAGGACACAAACGGTTGACGACTACCttgcttttttatcactctttaagcctataatgtttacattaaaaacagtgTGCGCGTGGTGGTGGTTAAAAGGTGTTGACTAATGTGTGTCGGGGGCCATGGAGGGTGAGAGATGTGGCACTGTACTATAAACCTAGTTAAACAATAAAGGCCTCCAT

Function

GO: NA

KEGG:

id description
ko03015 mRNA surveillance pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53019 lncRNA upstream 18691 17510870 ~ 17512831 (+) True G39516
TU53012 lncRNA upstream 30298 17500063 ~ 17501224 (+) True G39509
TU52988 lncRNA upstream 64926 17466087 ~ 17466596 (+) True G39489
TU52983 lncRNA upstream 66744 17463538 ~ 17464778 (+) True G39484
TU52985 lncRNA upstream 69272 17461864 ~ 17462250 (+) True G39486
TU53040 lncRNA downstream 57786 17589710 ~ 17590985 (+) True G39533
TU53105 lncRNA downstream 73899 17605823 ~ 17606816 (+) True G39579
TU53106 lncRNA downstream 75041 17606965 ~ 17607514 (+) True G39580
TU53120 lncRNA downstream 88799 17620723 ~ 17622507 (+) True G39588
TU53181 lncRNA downstream 153070 17684994 ~ 17686581 (+) True G39626
XM_039798104.1 mRNA upstream 71 17525015 ~ 17531451 (+) False fbxo42
XM_039798103.1 mRNA upstream 71 17525063 ~ 17531451 (+) True fbxo42
XM_039798160.1 mRNA upstream 44645 17480859 ~ 17486877 (+) True mfap2
XM_039798141.1 mRNA upstream 51430 17473313 ~ 17480092 (+) True sdhb
XM_039798165.1 mRNA upstream 68800 17458924 ~ 17462722 (+) False LOC120557636
XM_039798137.1 mRNA downstream 1141 17533065 ~ 17542138 (+) True slc25a34
XM_039798136.1 mRNA downstream 2156 17534080 ~ 17542138 (+) False slc25a34
XM_039798138.1 mRNA downstream 4182 17536106 ~ 17542138 (+) False slc25a34
XM_039798134.1 mRNA downstream 10284 17542208 ~ 17545551 (+) True LOC120557614
XM_039798131.1 mRNA downstream 17599 17549523 ~ 17555364 (+) False fblim1
TU52833 other upstream 333305 17193221 ~ 17198217 (+) False srsf3b
TU53107 other downstream 76006 17607930 ~ 17609216 (+) True G39581
XR_005639081.1 other downstream 361369 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 372774 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 657691 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 657691 18189615 ~ 18193926 (+) False tusc2b

Expression Profile