RNA id: TU53181


Basic Information

Item Value
RNA id TU53181
length 1061
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G39626
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17684994 ~ 17686581 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAaagtataaaaacaataaatctaTTCTGCagtcttctttcctcttctcccagTTGCTTTAGCAGCAGGGGCGTCGCTGCCTGCTTTAGCAGCCTTGCTCAGAGTTGCATTTCCTGCCTTTGCATCCTTTGTGGTCTTCGCTACTTTAGTTTCGGCTGAGTCAGAGGCTTCCACATCAACCTTTTCTGCAGCTTTTTTAGCTTTTGGCTTCTTTGCTGGAGCAGCCTTTGAGGTAGcagcttctttttctttcttagaCCTTTTGGGAGCACCTCTGGTGAGGAAGCCTCTTCTTTGGCAGAGTCTGGCGACTTGGCCTCTCTGGCAGAGTCTGGCAACTTGGCCTCTTCTTTGGCAGTGCCTTTCTTCGTGGTACCTTTTTTTTGACTTCTTGGCTCCATCCTTGGCTGCCTTTTGCACATTGGGATCCACGTTCTCAGCTTTGGGCTTTGCCTCCTTGACTGGTGCAAGCTTAAGACAggacaaccaaaaaaaaaaaagcccgaTAAATGACGTTATTTGATCAGCTTTGAAGCTGTAGACTTGACTTCTTACCCTAAATTTTCCCTGTGCGCCTGTAGTGGCCGTAGAGTTAGCAGGACGCACTAACGTGCCAGTCTCCAGTCCTTTTTTCAGGGCTCTACGGACGAAATGCTTCAGCCTTACCAAATCCACCGAGGGgtatttttgtttaatgtaatTCTGTATCGCTTGGAATGAAACCCCTTTGCGCGAGTCCAACTCTTTAAGCGCTTCTTTCACCATAACTGCTGTGGAGGGATGGGCTGTAAGTTTGCGCAGCGCCGCAGCATCTGgtttttttctcttcctccgGGGCTTCACTGGAAGACGGCGCAGGTGGATCAGCAGCGGCGACGGCAGCTGCTGCCGCCACCGCTGCTGCCCTTTTAGGAGGCATTACTGAGAATTTAATATAaaagggaaacacaagacacaaaAATCAGCGTGTTACGCTAAGTCTAAAAGTATGCTATATCTGCACACGCAGCACGTCTGTCTTTATGCAGCTGCTTCCGGTAAAACAAAACCAGGTGATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53120 lncRNA upstream 62487 17620723 ~ 17622507 (+) True G39588
TU53106 lncRNA upstream 77480 17606965 ~ 17607514 (+) True G39580
TU53105 lncRNA upstream 78178 17605823 ~ 17606816 (+) True G39579
TU53040 lncRNA upstream 94009 17589710 ~ 17590985 (+) True G39533
TU53025 lncRNA upstream 153070 17531522 ~ 17531924 (+) True G39522
TU53185 lncRNA downstream 3223 17689804 ~ 17690576 (+) True G39630
TU53191 lncRNA downstream 28831 17715412 ~ 17722348 (+) True G39633
TU53195 lncRNA downstream 41335 17727916 ~ 17728718 (+) False LOC120556838
TU53197 lncRNA downstream 48905 17735486 ~ 17735906 (+) True G39638
TU53220 lncRNA downstream 98678 17785259 ~ 17785810 (+) True G39654
XM_039798144.1 mRNA upstream 773 17681239 ~ 17684221 (+) False LOC120557621
XM_039798143.1 mRNA upstream 773 17681414 ~ 17684221 (+) True LOC120557621
XM_039798107.1 mRNA upstream 4561 17663261 ~ 17680433 (+) False tmcc1b
XM_039798109.1 mRNA upstream 4561 17663261 ~ 17680433 (+) False tmcc1b
XM_039798108.1 mRNA upstream 4561 17664790 ~ 17680433 (+) True tmcc1b
XM_039796612.1 mRNA downstream 4042 17690623 ~ 17698228 (+) True LOC120556839
XM_039796599.1 mRNA downstream 19634 17706215 ~ 17719329 (+) False LOC120556837
XM_039796602.1 mRNA downstream 19634 17706215 ~ 17719329 (+) False LOC120556837
XM_039796597.1 mRNA downstream 19634 17706215 ~ 17713442 (+) True LOC120556837
XM_039796600.1 mRNA downstream 19634 17706215 ~ 17713442 (+) False LOC120556837
TU53107 other upstream 75778 17607930 ~ 17609216 (+) True G39581
TU52834 other upstream 486777 17193221 ~ 17198217 (+) False srsf3b
XR_005639081.1 other downstream 206712 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 218117 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 503034 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 503034 18189615 ~ 18193926 (+) False tusc2b
XR_005639014.1 other downstream 529125 18215706 ~ 18226039 (+) False LOC120557740

Expression Profile