RNA id: XM_039796606.1


Basic Information

Item Value
RNA id XM_039796606.1
length 1927
RNA type mRNA
GC content 0.42
exon number 16
gene id LOC120556838
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17720441 ~ 17734011 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGGACAGTCTTAGTATTCAGCTTCATCATGGCTGGACGCCTGCTGTTTGTCATCCTCATGTATTCCTTTCACGAGGTTCAAGCACACGCTCTTCTTCCACCTAAACTGACAGTGAATCCGGCGGTGATCACAGAGACCGACTCAGTCACACTGAACTGTCAGTCTCCATcatctgtttctgtgtctcagTGTTATTTCTACACTTTAAGTGGAGGAACGGTCAGAGTCTTCTCATGTCTGCAGACACTGACAGGAACTGAGCTGCTGAAGATGTCGCATCAAAGTTTACCTGCTGAGGTTGAAGTGAAATGTTACTACACCGTAAAGGTTGGAGACAGAAATTCTCAATCTCCACACAGTgacacatcctccatcaccatacACGCTCTTCTTCCACCTAAACTGACAGTGAATCCACCAGTGATCACAGAGACCGACTCAGTCACACTGAACTGTCAGACTCCATcatctgtttctgtgtctcagtgttattttcacattttaagtgAAGGAACTGTCAAAGTCCTCTCTTGTCCGCAGACACTGACAGGAACCGAGCTGCTGAAGATGGCAAATAAGAAGTCATCTGCTGAGGTTAAAGTGAAATGTTACTACTTTGTAAACGTTGGAGAGAAAAAGTATCCATCTCCACACAGTGACACATCCTCTATCACCATACACAATATTGTGGAAGGAGAGTCAAGCATTATCCAGGCAATGCCAACCATTACTATGACTACAGatttgactgatagcagccCAGGTGTTTCCACGACTCCTGTGAAACCAGCAATGGATATTAAAGAGGTGACACAGACTATGCAGTCTTCTACTATGACCACAGGTCTGACTGTTAGCAGGTCTGGTGCTTCCACTCCTGTAACTCCTGCAAAACCAGCATCAGGTCACCTGACGGTTGGATCAAGCAACACTGATAGTTGTATCTCGACTTCCCTAACACCAGAGGAACCAGCACCAGATATTGTGGAAAGAGAGTCAAGCATGACCCCGACAATGCCAACATTTAGTATGACCAAAGGTCTGACTGTTAGCAGGCGTGGTGCTTCCACTCTGGTAACTCCTGTGAAACGAATGTCAGGTCAAACTGTTGATATGCCAAGTAACACTGGTAGTTCCACCTCTACTTACCTAACACCAGTGAAACAAGCAGCAGCAGAAACGTGGATATTGAAGTTTGTAGCAGTTGTGACTGGTTGTGGAGTCATTGTGGGCGTCATCTTGCTGGTTTCTGCAATTCTCTACAACAAAAAAACTGCAGGTTCTGAGGAAGTAAAAAGGCAAGACCCTGAAAACAAGAACttTGACACATACCATATGTACTACACCATCGATGAAGAGTCAGCTGCATCAGCCCTGAAGGATATGGTGTACAGCACCGTGCAGGCACACTGAAGCAGTGTTATACTGTatagagaaagagaagcagacAGCCTAAAAGACTAGAGAAATGTAAAAATTTAAACCTTGTGTTTAAAGTTGAGTGGTATATTCCAGACTAATGTTAAACGATTGTAATGTCTTTTTATCAGATCAACCAAACTGCTGTTTAAGACTGAACCAAACTTTTACAAAAAGTTTCCAAGTTTTCCCAGTTGGATGCACTTTTAAAGTTGAGGTTCATGATGTACAAAGCACAGCTTGGTTTCCAAACTGCATTTAAATTTAGCTTTATTTTAGATCAAGATTAAACATGCATTTAGTTTTACTCATACACAGTATAATTAAGACGAAAGGTCACTCgtgtttgtaattgttttgtttgctaATGCGTTTTCTGTTTAATGTTGGTCATATTTTTTAACTTACTGATACTGTACACACTGTATGCACATGGCCTCCCAATAATACCATACCTTGTAATACTTTGTATTGTTCAtttacatatcacacacacacacaaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53185 lncRNA upstream 29865 17689804 ~ 17690576 (+) True G39630
TU53181 lncRNA upstream 33860 17684994 ~ 17686581 (+) True G39626
TU53179 lncRNA upstream 33860 17685471 ~ 17686581 (+) False G39626
TU53180 lncRNA upstream 33860 17685471 ~ 17686581 (+) False G39626
TU53120 lncRNA upstream 97934 17620723 ~ 17622507 (+) True G39588
TU53197 lncRNA downstream 1476 17735486 ~ 17735906 (+) True G39638
TU53220 lncRNA downstream 51249 17785259 ~ 17785810 (+) True G39654
TU53269 lncRNA downstream 118506 17852516 ~ 17853366 (+) True G39665
TU53572 lncRNA downstream 714837 18448847 ~ 18452500 (+) True G39861
XR_005638964.1 lncRNA downstream 810145 18544155 ~ 18547192 (+) True LOC120557393
XM_039796599.1 mRNA upstream 1112 17706215 ~ 17719329 (+) False LOC120556837
XM_039796602.1 mRNA upstream 1112 17706215 ~ 17719329 (+) False LOC120556837
XM_039796597.1 mRNA upstream 6999 17706215 ~ 17713442 (+) True LOC120556837
XM_039796600.1 mRNA upstream 6999 17706215 ~ 17713442 (+) False LOC120556837
XM_039796598.1 mRNA upstream 6999 17706215 ~ 17713442 (+) False LOC120556837
XM_039796617.1 mRNA downstream 35476 17769486 ~ 17780828 (+) False LOC120556840
XM_039796613.1 mRNA downstream 43458 17777468 ~ 17780828 (+) True LOC120556840
XM_039796616.1 mRNA downstream 43458 17777468 ~ 17780828 (+) False LOC120556840
XM_039796615.1 mRNA downstream 43458 17777468 ~ 17780828 (+) False LOC120556840
XM_039797629.1 mRNA downstream 127336 17861346 ~ 17870786 (+) True LOC120557367
TU53107 other upstream 111225 17607930 ~ 17609216 (+) True G39581
TU52834 other upstream 522224 17193221 ~ 17198217 (+) False srsf3b
XR_005639081.1 other downstream 159283 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 170688 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 455605 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 455605 18189615 ~ 18193926 (+) False tusc2b
XR_005639014.1 other downstream 481696 18215706 ~ 18226039 (+) False LOC120557740

Expression Profile