RNA id: TU53269


Basic Information

Item Value
RNA id TU53269
length 521
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G39665
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17852516 ~ 17853366 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAAATGGAGTGATAAGAGCAGAGTGGAAGAGGTTCAAGCCTGAAGGACCAACTGGCATTAAAGCAGTGTACCAAGATTCATGGATGTGTGGTGTGCAGTTGTGGGCGTCTGACATTGGCTGCACAGCATCACGTGGCACCTTCTTCCCAGGCTGCCATTGGCTGGCACCTGTGGGGCTCTGTGAAGAAAAGCTTTTCTGACAGGACCCAGGAGCCCAGAGGAGTTGCTGGAAACTGGGAGAAGGACAATGTCGGTGGAACCAGGAGAGTAGTGGGGGGGCTCAAGAGATGGCATCACCATGACTGTGAGAGCGGAGATGCTGGGACGTGACCTCCCAGCCACAGCAAAGGGCAGGAATCCACAGAGAAGATCACATGGCTGAAGAGGTGCAGAGGAAAATGAATGAGGGGCAGGAGAGGACGGTGATTCGCAGCAATGACACTCAGAGAGCATGTGTCGTCATCATATAAGCTCAGCTGACATGTAGATTTCACACTGTTTAAACTTTACATCTATCCa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53220 lncRNA upstream 66706 17785259 ~ 17785810 (+) True G39654
TU53197 lncRNA upstream 116610 17735486 ~ 17735906 (+) True G39638
TU53195 lncRNA upstream 123798 17727916 ~ 17728718 (+) False LOC120556838
TU53191 lncRNA upstream 130168 17715412 ~ 17722348 (+) True G39633
TU53185 lncRNA upstream 161940 17689804 ~ 17690576 (+) True G39630
TU53572 lncRNA downstream 595481 18448847 ~ 18452500 (+) True G39861
XR_005638964.1 lncRNA downstream 690789 18544155 ~ 18547192 (+) True LOC120557393
TU53668 lncRNA downstream 717225 18570591 ~ 18570983 (+) True G39925
TU53669 lncRNA downstream 720316 18573682 ~ 18573909 (+) True G39926
TU53670 lncRNA downstream 720616 18573982 ~ 18574211 (+) True G39927
XM_039796617.1 mRNA upstream 71688 17769486 ~ 17780828 (+) False LOC120556840
XM_039796613.1 mRNA upstream 71688 17777468 ~ 17780828 (+) True LOC120556840
XM_039796616.1 mRNA upstream 71688 17777468 ~ 17780828 (+) False LOC120556840
XM_039796615.1 mRNA upstream 71688 17777468 ~ 17780828 (+) False LOC120556840
XM_039796607.1 mRNA upstream 118510 17726810 ~ 17734006 (+) False LOC120556838
XM_039797629.1 mRNA downstream 7980 17861346 ~ 17870786 (+) True LOC120557367
XM_039797628.1 mRNA downstream 20738 17874104 ~ 17888579 (+) True LOC120557366
XM_039798374.1 mRNA downstream 35863 17889229 ~ 17894265 (+) True card19
XM_039797862.1 mRNA downstream 51334 17904700 ~ 17930118 (+) True wnk2
XM_039797864.1 mRNA downstream 51334 17904700 ~ 17930118 (+) False wnk2
TU53107 other upstream 243300 17607930 ~ 17609216 (+) True G39581
TU52834 other upstream 654299 17193221 ~ 17198217 (+) False srsf3b
XR_005639081.1 other downstream 39927 17893293 ~ 17893420 (+) True LOC120558252
XR_005638976.1 other downstream 51332 17904698 ~ 17926887 (+) False wnk2
TU53438 other downstream 336249 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 336249 18189615 ~ 18193926 (+) False tusc2b
XR_005639014.1 other downstream 362340 18215706 ~ 18226039 (+) False LOC120557740

Expression Profile