RNA id: TU54153


Basic Information

Item Value
RNA id TU54153
length 1668
lncRNA type sense_over
GC content 0.36
exon number 1
gene id sema3fa
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 19687671 ~ 19741389 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aggTAAATTTGTGCAAACATTGttgttataattattatattattgttagTGTTATTGTTTATTACAATGTgttattatgttgaaaatatctCTATGTATGTTGGGTGTTTTTGtgaaacagcaacaacaacccaGGACTTTGGGAGTATCCACACATGGAAGAGGACCGATGAACATGTATTTAACTGTCACAGGCGACCATGTTGGATCCCGTGACTGCTGGCAGTATTCAGTGTCCAAGCTGGAAGTCGAGTCGCTGCTTCAGTGAAATTCTCGAACTTTCCTAAACGTCTTCACCAGAACTCAGCaccaaaacagttttttttttttttttactgaaagaTACAAGCTGTTGACAGAATGATGATCGCATTTCTTGGGACACGCAAGGATGAAAGAAATGCCCACAGACTGCGGCTGTGACAACATGTTGCATGTTAATGAAAGGCCCTTTGGCAGGTGAAACGTCTCTCCTTTCATGTTAGTGGTCCAGCCTGGCCTCAAGCAATGATGCTACATCACCCACCCAAATTCTTCCAAAATCTGTTGCTGccaagtgtttgtttttgtttatatgtGAATATATCACATCTCAATGTTGTATCCTTAACAAACGTTTGTGATAAGCTGTTTTTTGCTGGGGGAAAGGGTCCTTTAACGACAAAAAAGCTGAAAATATAACattgccttctcttttctcttttgagATATGAAATTCCAGCAGGCAGCTATATGTGAGTTTGTGACAGTTTGTGATATCAAAATATTAGAGAAAAAGCACCTTCTGTTGCCAAATCGGTAATCTTGATAAAACAGTAAATACTTCACAAGTATCTGTGGCATATGCAGTATATTcatttaaggttttttttttttttttttttttagctctcaATGAATCCATTCCTGCCAGTTTCATGCTAAATATTGGTTTCACTAAGTAAATATTAATCATGTAATAGGTCTACACTTTTATTAGATTACAACGATAAAGTTGCTGATTGCAGTGCTTTGGAATTGACTACTTTGATTGGTTCTGAATTTTTTTGTATCAACTTCCATAGCTACAGTGCTTTTTGTCATCCTGCTATGTGTGCCACAGACTTAATATAAAACTTCCGtacagtggaaaaaaaatgtcacaatgTCACAAGTACAACCACTAACAAGCTGATCACCACCAAACCTGAAGAGAACATGTACCAAACTCTTCAGAAGGTGGCTTTTCATTGTGCATGGCATGTACAGTTTAATGTTTATGGTATTTGTCTAAAATGCTACGTTGCTGTGGATGTCAGTGAATGTCTTTCTCGTTGTGGGAATATGGAAATACTATCAGTGCAAGAAAGAAAGATGCTGAAAGTATAGAAAGGTCAGATTGTGATTTTAaatcctctctctctatctctctctctctctctctatctctctctctctgtatgtctcttagtctctatttttctctcttctcaaaAATGTGCATATATTTCAAACATGcatctgttttattttctctgtttgGCAGATTTTGCTCTGGGTCTTTGAGGTAAAGTAATGTATGATATAATGCACAGTTGATGTTGTTGTAATGACTTGTACAAAAATTACTATCTTTTCTTCCTCATCAATGTTGCTGACTAATAAATTAAAGCTCTATATTTTATAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54057 lncRNA upstream 291455 19442047 ~ 19448266 (+) False slc38a3b
TU54058 lncRNA upstream 291455 19442047 ~ 19448266 (+) False slc38a3b
TU54011 lncRNA upstream 313292 19424871 ~ 19426429 (+) False brk1
TU54012 lncRNA upstream 313292 19424894 ~ 19426429 (+) False brk1
TU54035 lncRNA upstream 364882 19374630 ~ 19374839 (+) True G40182
TU54169 lncRNA downstream 19785 19761173 ~ 19762498 (+) True G40284
TU54235 lncRNA downstream 326890 20068278 ~ 20121870 (+) True G40339
TU54258 lncRNA downstream 405347 20146735 ~ 20146983 (+) True G40352
TU54264 lncRNA downstream 415466 20156854 ~ 20157525 (+) True G40357
TU54370 lncRNA downstream 485949 20227337 ~ 20227816 (+) True G40433
XM_039797590.1 mRNA upstream 107202 19617181 ~ 19632519 (+) True LOC120557344
XM_039797592.1 mRNA upstream 107202 19617181 ~ 19632519 (+) False LOC120557344
XM_039797591.1 mRNA upstream 107202 19617181 ~ 19632519 (+) False LOC120557344
XM_039797594.1 mRNA upstream 123284 19601978 ~ 19616437 (+) True LOC120557345
XM_039797713.1 mRNA upstream 151105 19575151 ~ 19588616 (+) True LOC120557413
XM_039797691.1 mRNA downstream 1524 19742912 ~ 19746843 (+) True gnat1
XM_039797692.1 mRNA downstream 1529 19742917 ~ 19746843 (+) False gnat1
XM_039797616.1 mRNA downstream 53966 19795354 ~ 19804157 (+) True ddi2
XM_039797617.1 mRNA downstream 53966 19795354 ~ 19802238 (+) False ddi2
XM_039797618.1 mRNA downstream 63969 19805357 ~ 19809864 (+) True si:ch73-15b2.5
XR_005638959.1 other upstream 107709 19617181 ~ 19632012 (+) False LOC120557344
XR_005638958.1 other upstream 107715 19617181 ~ 19632006 (+) False LOC120557344
TU54005 other upstream 413096 19324829 ~ 19326625 (+) True G40164
XR_005639014.1 other upstream 1513682 18215706 ~ 18226039 (+) False LOC120557740
TU53438 other upstream 1545795 18189615 ~ 18193926 (+) False tusc2b
TU54184 other downstream 110160 19851548 ~ 19859341 (+) True cenps
XR_005638939.1 other downstream 176501 19917889 ~ 19923549 (+) False abhd14b
TU54259 other downstream 406716 20148104 ~ 20148690 (+) True G40353
XR_005638988.1 other downstream 2208988 21950376 ~ 21991799 (+) False itga7
TU55524 other downstream 4007522 23748910 ~ 23760951 (+) False cbfa2t2

Expression Profile