RNA id: TU54169


Basic Information

Item Value
RNA id TU54169
length 1220
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G40284
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 19761173 ~ 19762498 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCCTTTTTTATTCTTGAATATATTGAAGTTGTGCTGTTTTACTCTTCCCAGGTAGGCACCCCTTGCATGCTGCTTTGCTTCAGAGGTGAGAGACATTGCACAAGGCACTTTGTATTCTGCCGCTCTCTCAGCTTCAAGGCAGCACGCACATAATTCCACTGAGGCTACTTACAAACAAGAAGCCAATATGAACCACACAACCCCGTACAGCTTTACTTTTAGCACATTCAGACTTTAAATAGAATCATATATTCATACACGCACATCTCACATCCGTAAAAATCATACTAGCTTGATATTTGTACAGACCTGCATCAATTGACTTGCTTAAATGCAGAGTTTTCAAAAAACATAGACATGTCCTTGAAAGAAGAAAACCTTATCAAGCGGAGGGTGACAGTCATCAAAAACATGTCCACATCAGTAATCTCCTGGCATCATGTCCGACTGTATAAAGAACATTGCTCGTTATATGAGGCCTGTTTGACAGAATCAACCCTCCTTCAAGAGGGTGTTGTTGTATACCCAAGATTAGCGTTGTAAACCACTGGGTATGATCAACCGGGTAATGCCTAAATGTAGATCCAAAATTTGATTCTGACTCCAAGTTTAAGTACAGCTTTACAGGACGAATAATGCCAATAAAATTCATTACATTTGGTATCAGAATCACATTTTTAGTAGTGCATTATCAGGGTTTGTGAAAGAACCACGACGTGAAAAGGGGGGAAAACGTGTCAGAAGCAGAACAGAGCAGCATGTGAGTTGAAGATACAACTTGACATCCTCGCAGAGTGATGGGGGGGTGGCATGACAGTAACGTGGCAAACACCGCTGGAAAACAACTCCTATATTTTTAGCTCCTCCTGGATTTTGAGTGCTGGATGAGCCACTGAAGTGTGATGTCTGGAATCAAAGAAACATGCTGCGTCAGTCTGAGAATCAGTTAATGATTCAGGCATTTCTAAGAAATCGAGTAGCAGCATATCTCTCTGTCCTGAATAGCTGCCAGATTCCTTTGAAAAGGGAAAAAGGTGCATGTACAAATAAATATGAGAAGAACGCATTAAGGCTGGTCATCAATCTCACCCATCTGCAGCTTGTGCGGCATAGTTTAAGGAAAGAGCACAACTCTCAGCGCATGTTTCTAACTTGACAGCAGAGGGAGCCAGTTCCCTGTGGAGCTAGAACAGTGACattgaaaaaagaaacattggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54153 lncRNA upstream 19785 19739721 ~ 19741388 (+) False sema3fa
TU54155 lncRNA upstream 19785 19739815 ~ 19741388 (+) False sema3fa
TU54057 lncRNA upstream 312907 19442047 ~ 19448266 (+) False slc38a3b
TU54058 lncRNA upstream 312907 19442047 ~ 19448266 (+) False slc38a3b
TU54011 lncRNA upstream 334744 19424871 ~ 19426429 (+) False brk1
TU54235 lncRNA downstream 305780 20068278 ~ 20121870 (+) True G40339
TU54258 lncRNA downstream 384237 20146735 ~ 20146983 (+) True G40352
TU54264 lncRNA downstream 394356 20156854 ~ 20157525 (+) True G40357
TU54370 lncRNA downstream 464839 20227337 ~ 20227816 (+) True G40433
TU54379 lncRNA downstream 503342 20265840 ~ 20266366 (+) True G40442
XM_039797691.1 mRNA upstream 14330 19742912 ~ 19746843 (+) True gnat1
XM_039797692.1 mRNA upstream 14330 19742917 ~ 19746843 (+) False gnat1
XM_039798715.1 mRNA upstream 19784 19687671 ~ 19741389 (+) True sema3fa
XM_039798717.1 mRNA upstream 19784 19687672 ~ 19741389 (+) False sema3fa
XM_039798716.1 mRNA upstream 19784 19687674 ~ 19741389 (+) False sema3fa
XM_039797616.1 mRNA downstream 32856 19795354 ~ 19804157 (+) True ddi2
XM_039797617.1 mRNA downstream 32856 19795354 ~ 19802238 (+) False ddi2
XM_039797618.1 mRNA downstream 42859 19805357 ~ 19809864 (+) True si:ch73-15b2.5
XM_039797971.1 mRNA downstream 76666 19839164 ~ 19847354 (+) False h6pd
XM_039797973.1 mRNA downstream 78902 19841400 ~ 19847354 (+) False h6pd
XR_005638959.1 other upstream 129161 19617181 ~ 19632012 (+) False LOC120557344
XR_005638958.1 other upstream 129167 19617181 ~ 19632006 (+) False LOC120557344
TU54005 other upstream 434548 19324829 ~ 19326625 (+) True G40164
XR_005639014.1 other upstream 1535134 18215706 ~ 18226039 (+) False LOC120557740
TU53438 other upstream 1567247 18189615 ~ 18193926 (+) False tusc2b
TU54184 other downstream 89050 19851548 ~ 19859341 (+) True cenps
XR_005638939.1 other downstream 155391 19917889 ~ 19923549 (+) False abhd14b
TU54259 other downstream 385606 20148104 ~ 20148690 (+) True G40353
XR_005638988.1 other downstream 2187878 21950376 ~ 21991799 (+) False itga7
TU55524 other downstream 3986412 23748910 ~ 23760951 (+) False cbfa2t2

Expression Profile