RNA id: TU54184


Basic Information

Item Value
RNA id TU54184
length 3366
RNA type TUCP
GC content 0.41
exon number 5
gene id cenps
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 19851548 ~ 19859341 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAATTTGTGCCGCGAGTTTTTGTTTTCTAGTTTTAGCTTCAAGCAAACAACTTGACATGATATGTTTCTCACAccttagtggatttttttttcaacgttgttACTTAATTGATGCCACTGTGGTCGAAAGTTTCTCCGCAAGAAGATGTCAGTCGATAAAGACGAGACGCAACAGAGGTTAAAGGCAGCAGTCCATTATACGGTGGGACGCCTGTGTCAGAGGATGGGAGAGGACCACCGGAGAGAGTTCAGTCGACAAGTCATAGCAGCGATAGCCGAGACAGCATTCAGACAGTGTGatgTATTTGCTAAAGACCTGGAGGCCTTTGCAAGGCATGCTAAAAGAAGCACAGTGTCTTCCGAAGATGTAAAGCTTGTAGCCCGTCGCAGCACTGCATTGtccatctacatacaaaataaaagtgaaGAACTGAACCAGGAGCAGAGGGATTTGAAAAAGAAGAATGCTgggaagaggaagagcagagacACGGAGGAGAGCAGAGAATAAGGACAAGACAAAGGCAGGCCTGCAGTGTCTCACTTGTGCccaacattaaaataaacatgaagGCTGACTAATACATGACAATAAGTTAAGTGTAATAAAATGTGCCATAGGATGCTATGGGAAATGATGCATTTCAACTTTCCAAGTATTCCACAgcatgagatttttttttatattactttaGTTTTATGATTTGGAGAAAATAACTTAGGACCTGCTGATGCAATGTCAGGTGATAAGTGCATTTGGCACTGGTTTGACATACAATAAAGATTATGTATGAACTGAGTCAAAAAAGGCTATTTTCTGTCAAAGTGACGGACTACAACTACTAAATTATATACCTGCCGTTTCTCTGAACTAAACATGTATTTTTCAATTTGGGAAACCATAAAGGTACTATTAAGACTGTCAGGCAAACTAACATACTCAGTGACCACTTTTATTAGGTAAACCTGGATAATCCAGTGCTATTCAATACACCTGCCTAATTGATATTTTTCATAAACTATGACAGTTGCATAGTTAGTGGTGGCGTTGTACTGGTCTGCAGTATATTCAGTGGTGATTCTAATATTGTGCCCCCCCTCATGTAAATAGGTCAAGTTTTAATTGGAAACATGCATCTATATAATTTAGTCCAGTACAACAACTATGACCTCAAAGTTAATGTTAGACATTTAACAAAATAGCATTTTGTACTTCATGAAGGTAAAATTTATGGCAAACTTTTGATTTGCAATAGATTGTACAGGTGTACCTAATGAAGTGACCACTAAGTGAAATAAATTCCTAAGCTCAGCAACATGCCATTAGTGGTCTTATTACTTAAGCCAGAGTAGGGACAGACAATACAGTTTGGAGAGGTGATGCCACATTGTTGAACTCATCTATTTAAGGTTAAAATAACTCTCCCCTCCCCACCTTAAAAGTAGCTGTGGATAGTCAAAAAGGGGATCATTCACTCAGACAAGCCATCAAAAGCAGCAAAAAGACAGGTACTACCCCATGTCATGTCTGAGAAGGCCACACACTGAAAGTGTTGGAACTTCCGTCTTCGTCCTTCAGAACAGACTTCAGTCAGGGTTCAAACGGAGACCTCGACCAGCAGAGCCCAAGGTCCCTAGATATGTGAATCGaattagatgtttttttatttgacaaacTGACCCAAGTAATATCAACTAAGCATCTATTCAAATGAACTTTATTAGAACTCCCTTCATTTGACAGGTTTTAAACACCTCAAACAACACAAGAGCTACTGGGAATCATTGGACACACCACTCCACGTTCTCACACTATCACTCACGTCCCCCAGAGTCTTCAGCAGGTGTCATCCACATCAAGTACACACTTACAGATCAGTTCAATAACATGAaagcacacacaccatacagcaTTCAAATCAGATAATATAAGCAATACAAATTCATCACAACATTCCACTACATTTTGATATTTCTGCACTTGATCGACATACTTAAAGAGTAAGGAAAAACTtgcaaagatttaaaaaaaaaaaaaaaaaaatctcttgaAGTACTAATTAAAGAAAGTCCATGTTAGGGGGAGGCGCTCGTAGCATCTGCAGCTTCCACTCACACATTCAAAAAGCAGTCAAATTGGGCTCTTTCACTGCACAACCAGTCCGTTTCACGCGTCTCTCCGTTCGCTCACTCATCGCTTCACTCTTCGCCACAAGCCATCCTCAATCGCACTCATCAGTTCTTAAAATGTCAGTTGCGCAGTTCTTTCCATTTAAAAGTGGATAAAAGTGAAAACACCCACCGTCTCTTAGAACATGCGGAGTGAAGCCGTTCTTTGATGGCATAGCATTTACAGGTGGGAAGAGGGAGAATGATACCGATATCACCCCAAGAATGCTGCCAAAGAGGAGCTTCCTCACAGGAAAATGGAAGAGAGGTGAACTGCAGAAGAGATTTCAATGAAGGCTTTTCCACAGTACTTTACTGCAAATAAAGTTGTACTAAAAACATTTAGGTTTCAACCAGATTCTTTCCAATGCAAGATTGCCGTTTAAGTCGATGACAAAGCCGGATAATGGTGAACCACAAACATTCATGCATTTTCAAAATGGTTATCACATTTCACAATACATGCATTAGAGAATCCAGTTGAAATGGATAATAACAAATGAGACATCAAAAATAGCACTTTAGTCAGACATCCTGGTAAACAATTCACTTAAACACTTTCTAAATTAAATCTTTAGCATTTTTTCCAAATGTACAAAACATCTTCCACAAAAGTGTTAAGTTTTCAGATACGCATCAACACCAGAAATAAATTTGGAAAAAAGACTCATCTTCGTCACAATACTTACCATACAAAcacttaacttacataccccACCCAGATGACTTTGACTCCATACTAGACCCAAAACCTGTGCTAAACCCACTACCGCTGGTTGTAGAGTTTGACCCTGTTCCCCAGCCGAGACTTGCTGAGCTGGTGCCGTAGTTGCTGTTGCCTGTACCGAAAGACTGACTCTGGTCCCTACTAGAGCTTGTTCCACTGGAAGCACTGCCTGAGGTGGATGTCTGCTGCTGGCTAGCCAGCATACCCATCATCCCCCAACTACTCTGCAGAGCAGCCTGAGCAGCAGCCATCATAGCAGGGTTCAGACTAAAGGAACCAAAATTAGCCAGACTACTGTTAGTGCTGCTCCCTAACCCACTACGGCTGCTTCCAAACGCTTGAGCTCCAAAACCATTCCCAAACCGTGTCGTACGATCAAACTGCCTACTGCCATGTTTGGGCTCAGCATTTGAGATGTGAACACTGACACCTTTGATTATTAGGTCCTCTCCACAGAGAGACTGGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54169 lncRNA upstream 89050 19761173 ~ 19762498 (+) True G40284
TU54153 lncRNA upstream 110160 19739721 ~ 19741388 (+) False sema3fa
TU54155 lncRNA upstream 110160 19739815 ~ 19741388 (+) False sema3fa
TU54057 lncRNA upstream 403282 19442047 ~ 19448266 (+) False slc38a3b
TU54058 lncRNA upstream 403282 19442047 ~ 19448266 (+) False slc38a3b
TU54235 lncRNA downstream 208937 20068278 ~ 20121870 (+) True G40339
TU54258 lncRNA downstream 287394 20146735 ~ 20146983 (+) True G40352
TU54264 lncRNA downstream 297513 20156854 ~ 20157525 (+) True G40357
TU54370 lncRNA downstream 367996 20227337 ~ 20227816 (+) True G40433
TU54379 lncRNA downstream 406499 20265840 ~ 20266366 (+) True G40442
XM_039797979.1 mRNA upstream 19 19849826 ~ 19851529 (+) True rbp7b
XM_039797971.1 mRNA upstream 4194 19839164 ~ 19847354 (+) False h6pd
XM_039797973.1 mRNA upstream 4194 19841400 ~ 19847354 (+) False h6pd
XM_039797972.1 mRNA upstream 4194 19843013 ~ 19847354 (+) False h6pd
XM_039797970.1 mRNA upstream 4194 19843014 ~ 19847354 (+) True h6pd
XM_039797985.1 mRNA downstream 18081 19877422 ~ 19884965 (+) False si:ch211-161c3.5
XM_039797986.1 mRNA downstream 18081 19877422 ~ 19884965 (+) False si:ch211-161c3.5
XM_039797989.1 mRNA downstream 18857 19878198 ~ 19884965 (+) False si:ch211-161c3.5
XM_039797991.1 mRNA downstream 24260 19883601 ~ 19888732 (+) False si:ch211-161c3.5
XM_039797990.1 mRNA downstream 24261 19883602 ~ 19888732 (+) True si:ch211-161c3.5
XR_005638959.1 other upstream 219536 19617181 ~ 19632012 (+) False LOC120557344
XR_005638958.1 other upstream 219542 19617181 ~ 19632006 (+) False LOC120557344
TU54005 other upstream 524923 19324829 ~ 19326625 (+) True G40164
XR_005639014.1 other upstream 1625509 18215706 ~ 18226039 (+) False LOC120557740
TU53438 other upstream 1657622 18189615 ~ 18193926 (+) False tusc2b
XR_005638939.1 other downstream 58548 19917889 ~ 19923549 (+) False abhd14b
TU54259 other downstream 288763 20148104 ~ 20148690 (+) True G40353
XR_005638988.1 other downstream 2091035 21950376 ~ 21991799 (+) False itga7
TU55524 other downstream 3889569 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other downstream 3898417 23757758 ~ 23760951 (+) False cbfa2t2

Expression Profile