RNA id: TU54264


Basic Information

Item Value
RNA id TU54264
length 576
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G40357
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 20156854 ~ 20157525 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTCTCGTTTATTAATCACAAATTCTCTTTTGgacattattaataaatatctCCTTCCTCACTTGACCCAAACAGACACGTATGCTAATTCCTGACAAggacatttgtttaaaaaaaacatcaacactaatctaacataaaaatgacaaaaaatgactTCACTTTCACTGTTATTTCAAGAAAGGTCTTCCTGTCACTGAAGGCATCTTTGGTTGAGGCTTCTCTGTATCTTTCACTCTGTTTTCAGTTCATGTCACTTCCAGCACACCACGATGTTGGGATCATTTTCCAAACGTTCGTCCAGCTCCTGGTAACTGATCCCTGTTTGCAGCAGATCTCATCGTAACTATGACAACCGGTATAGAGTCGCGGCAGCCTGCTCCTCTCGTCACGGATCACCTTCACCGGATATTTCTGCAGCCGTCTAATAAGAGACTTCATCAGTCCAAATTGGATCAGCCTCCTGAAAGGAAACACATGACACGACCCGCATGTAAATAAATGTCACTCTGGCCTGACTTTTCAAGAGTCATGACGTCTTTTTAGGAACTGATAAAGACCTCTCGTCAACCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54258 lncRNA upstream 9871 20146735 ~ 20146983 (+) True G40352
TU54235 lncRNA upstream 34984 20068278 ~ 20121870 (+) True G40339
TU54169 lncRNA upstream 394356 19761173 ~ 19762498 (+) True G40284
TU54153 lncRNA upstream 415466 19739721 ~ 19741388 (+) False sema3fa
TU54155 lncRNA upstream 415466 19739815 ~ 19741388 (+) False sema3fa
TU54370 lncRNA downstream 69812 20227337 ~ 20227816 (+) True G40433
TU54379 lncRNA downstream 108315 20265840 ~ 20266366 (+) True G40442
TU54439 lncRNA downstream 261615 20419140 ~ 20423496 (+) True G40479
TU54466 lncRNA downstream 334469 20491994 ~ 20531354 (+) True G40488
TU54621 lncRNA downstream 565697 20723222 ~ 20725950 (+) True G40592
XM_039797269.1 mRNA upstream 233305 19917889 ~ 19923549 (+) False abhd14b
XM_039797267.1 mRNA upstream 233585 19917889 ~ 19923269 (+) True abhd14b
XM_039797268.1 mRNA upstream 234050 19917891 ~ 19922804 (+) False abhd14b
XM_039797991.1 mRNA upstream 268122 19883601 ~ 19888732 (+) False si:ch211-161c3.5
XM_039797990.1 mRNA upstream 268122 19883602 ~ 19888732 (+) True si:ch211-161c3.5
XM_039797440.1 mRNA downstream 3844 20161369 ~ 20167791 (+) True hemk1
XM_039797437.1 mRNA downstream 30130 20187655 ~ 20195749 (+) False glyctk
XM_039797432.1 mRNA downstream 30136 20187661 ~ 20195749 (+) False glyctk
XM_039797435.1 mRNA downstream 31873 20189398 ~ 20195749 (+) False glyctk
XM_039797434.1 mRNA downstream 32169 20189694 ~ 20195749 (+) False glyctk
TU54259 other upstream 8164 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 233305 19917889 ~ 19923549 (+) False abhd14b
TU54184 other upstream 297513 19851548 ~ 19859341 (+) True cenps
XR_005638959.1 other upstream 524842 19617181 ~ 19632012 (+) False LOC120557344
XR_005638958.1 other upstream 524848 19617181 ~ 19632006 (+) False LOC120557344
XR_005638988.1 other downstream 1792851 21950376 ~ 21991799 (+) False itga7
TU55524 other downstream 3591385 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other downstream 3600233 23757758 ~ 23760951 (+) False cbfa2t2
TU56251 other downstream 6111077 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 6384982 26542507 ~ 26548799 (+) False G41850

Expression Profile