RNA id: TU54439


Basic Information

Item Value
RNA id TU54439
length 4357
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G40479
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 20419140 ~ 20423496 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tatttctttaagtGCCATTCATGCATATAGGGGACGGGGTGGGGTGGGTGGTGGTATCAACAATTCTAATAACACTTCGAGTTATTTTACAGCACTAAACGAATACAAAGAGTAGCTGTGTCACCTCATTGgacaaaaaaagtataaaccgtgcaataaacaaaaaaaggacaaataggagagaaaaaaaatatacaagcAATGACAAAGACGAaatcaaacaaaacagaaaaataaaacacaaaccaaATATATATTATCAACACTGAAACACTGAATGTAGAACCATAATACAGGTAAAAGGTAGTGTCACACAAAAAGCCAACGCATTTTCATCAGATATATAcaatatagatatatacataCTGTCACCCTCTGATTGGACAATAACAAAATACTCTATTCTTTTCACTCTTATCTTCCATGAATAAGACCCACCTCCTGTCTTGATACCCCACCCCCAAGAGGAAAAAAGGGATGATTGAAAAGACATATATGCACAAGCACAACAACACACCAGCACTGAATAAAATAGGCCCCAATCAGCAGTACTTGTTGGCAGTTCTCTCCCATATTGTAACaaggcttttcttttttatgtttatcttttttttctctcccaatAATAGTAATCTCTCTGGCAGGTACATGTCCAGCGGTATTTAAAAACTTAGATCGTCTTTTGAAGAACTAAAACtcacacaagcaaacacacaaatacatccacacacacatccacacataaTGTAAAATTGTGATCCAGTCATTGTCTTCACCGGTTTCCCTTTTAGCCACATCCGTTTGCTCAAATCTTTTGTTTTCCCAATGGGCTGCTGTGCTCAGATAGTAGCTTGTGTGTTAATGATCTTCACCTGAAGAGCTGAAACACACTTCTCCTTCACACCAACCAAGGACTCGCAGGATGTTCTCTATTGTAGGTCCACAGAGTCCTAACGAAAACACACTGATGCTCTTTTTCACTGCTGTCTTTAGTTGCAGTCCTTTGGCCCACACTCACCTAAAATAGTCATGATTTGGGTCACTCAACTGACTAAGTACTCGGTCTGAGCACTGATTAAGAAATTCTGGCAGTTGAAcaaaactttaaaaactcaTAGTTGAGATACACAGGCGATGAAATCCTCCACATACAGCGGACAtttcacatacaaacacagacaaaagaTAGCAGTAAGGAGGAGTGGACAGGTATGATTGGcaggaaaatataaaaatgaatggcagttCATCATTTGAAAGAACAGAATTTGACTTCATCTGCACGGTGCAGCTGTGGACAGTTTAACAGACGATCTGCAGTATAAAACTGGACTGGTTCTAGTTTCAAATAACCTAATATGTGCTCAAAACGTAGAAACATCTGGTTCCATAACATCCAATAAAACGACAATGTGAGACTTGAACGTGCCTTTTCTCACAATAACAAAGACATTATGCAatatcgtaaaaaaaaaaaaaaaaataatcatgattGTCATCCAAATATGAAATCAAAACTGTGACCATTGGAGTCCCTAGTTGTTAAATtatcttaaaggaatagtttgacatcttgggaaatacactttcttgccaagagttagatgatgtcatgtttgtacagtaaatagaacagtaaaatgttgtttttttaacagataaaCACATGAGATTTAACATGTTTACTAGTAAACTTGCTACTTGCAGATGGATTTGGATGTTAGCTgtagcttcaaaaacaaattccaaaatgttgaactattcctttaaacaaGGACACAGTGTTATAGGTGCGAAGCACCGTACCAGGTCATCAGTATTAAAGAGAGGACAAATAATCCTGTCCATGGTCAACTGTGACAACTGATAGCTTTGAATGAAAGAATGAGTAGGTGAGCGACTAGCTTTTGAGATCAAGGAGGTGCTTTGCATCTTAAAAACAGTTAAGATCAACAGAAGGTGTGCAAAGGGcgctatttcttttttttttttccctcctttcttttttcaacatagtgtCTCTAAAGTTCAGCACCCGTCTGATTGAGAAGCCACTTGCTACAGGACACAGAGGACAGGTTTCCAGAACCGCTGAGCTCCCGGTTCTGTGCTTCGGAAACCcttcacacaaaaaaagcatGTCTCAAATCTACTCTTTAATCACTGTGTGCATCTGCTTTTGTGCTCATAGATAGCATAGAGATGATTGGAGCAATCAATCATAGTCctaaaattacaataaaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctcattctGTTATGATTGTATAATAGCAAAGTCTGAAGCTATCGAACTATCACAGCTAAACATTGGGCAAGTAAAAGAAAGAATCATATCTCCGTATTTGAAATGTCAGAAGTGACAAACACTGAGCGGAGCACTGAAAACTAACTTTGATgtacaaaatgtggaaaaaggcATGAAACTTATTTTACAAATCAAAGAAACGTGCAGTAAAACTAAAATTCTTTTGCCCTCTTCAAATGGAAACATCTGATGCATATCCTATTGATCATTAATCAATAAATTAGTATTAGAACATTTAAAGAAGTGTTACTCTTTAACAGCcttctttcattttttatttttaacacaatttGTTATTCTACTAGCAATGCTTCAAGTCAGTGAGGCTTGAAACCATTACTCTCAAAATTTCATACAGGCTCTTTACGTTTCACTTTTTACTGTCACTAGTATAAATTACATGGTTTGCATACAGTTTGAAGAGAAATAGTTTGGCATGTTGGAAGGGAAATATGTTAATACACTTTCTTGCATAGAGTTAGaagagaagatcaataccactcttaCAGTGGGGAAAGACTGGAACCAGAGAAATGGCTACTATGACTCTGTCCACCTGTAACAAAGAtcagcctaccagcacctctaaagctcagtaATTACAACATTATAGCTGCAGGAAGTCACTGCAACCAGCCATAGAAATAGTCCGGCACGTAACCCCCAGTAAAACCACAACTATTTGTTTTTACGCTTCAGTATTAAACAAATGAGCTATGACTTAAGTAGTGAGCTTTGGAAGAGCtcgtaggtggattttgttaccttcagACCGAGCCAGGATACGCGTTTCCCCCTTTTTACAgtgcagcttcatatttactctACAATCTTCTCAACTCCCAAAACGTCGGactatagctttaataataCCAAACCCTACTGACTTGGACGGCACATTTAAACGAAAACTTTCTTGCAAACTAGAGCCAATCGGACACTGGATTATGGAGGCTGATTCTTTAAATATACCCATATTTAAAGGTTTAAAAAGATCATATGATGACAGATCGGCcgatatttgttttttttattaacatttaagGTTCTCTAAAATTTTGACCATGATATGTGCTGAGTGGGACAATTAACGGTTTCAAAATCAACTTGTCAGTGCTCTCTGGCACAAAGTTTCTAAATGATCAATCTATCTCAAAAAtatctttgacatttttggacagTAATTTATTGCTTATTagctgacatactgtatatgctcATACAGATATATTTGTAATAAGATGGTCAGCCGATTATAGTGGCCCTACCAATATATCAGACTCTATTGCAAATGATTTAATTGTCTCTGAATGAGGGTGGCTTGTTTAATGATCAATAGGCTACTCACCATCATGAAAAACCATACCATTAAAACTAGCTTGAAAATGTGAATTTGTTTAGTAATTCACGTTAAGCAATTATTAACAGACATGATGCACACAGAGAACCAAAACCTCAGGTTACTTTGggtttaaaaaatttaaaaagacaaaaataagttTGACTTTCCTGCCTTCAACTTCTTCTCAGACCCCATCATATTCATTCATCTCGAAGTGCTTGAAACAGAGaattaagaaagaaaaacaaagttgcAGTACTCCCATCACTAGTCTGTTGCAGTGAGCCTGATCATGGTGGTTGGCTATGAAAACACATCACGATGCTTTcggtcatctctctctccctttctctcttggTTTGTTTAATATCAAGCCTGCTTAAACATTTAACACCCtgttcaaagttattgtaaacctAACTTTACCACCAATTCAGCCACACTTTATCCCAAATGTGACCAACGAGCACCATGACATCACTCACAGAATCAGCCTGTgtttcttaaaaacaaaaataaaaaaaaaacttttttttcttcttttttttctttttttttaaagagagaaaCTCATCCAAGAGGCAGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54379 lncRNA upstream 152774 20265840 ~ 20266366 (+) True G40442
TU54370 lncRNA upstream 191324 20227337 ~ 20227816 (+) True G40433
TU54264 lncRNA upstream 261615 20156854 ~ 20157525 (+) True G40357
TU54258 lncRNA upstream 272157 20146735 ~ 20146983 (+) True G40352
TU54235 lncRNA upstream 297270 20068278 ~ 20121870 (+) True G40339
TU54466 lncRNA downstream 68498 20491994 ~ 20531354 (+) True G40488
TU54621 lncRNA downstream 299726 20723222 ~ 20725950 (+) True G40592
XR_005639032.1 lncRNA downstream 302598 20726094 ~ 20731954 (+) True LOC120557890
XR_005639061.1 lncRNA downstream 343486 20766982 ~ 20767927 (+) True LOC120558155
TU54702 lncRNA downstream 516210 20939706 ~ 21004960 (+) True G40652
XM_039796281.1 mRNA upstream 195123 20218566 ~ 20224017 (+) True si:dkey-183j2.10
XM_039797430.1 mRNA upstream 215287 20198456 ~ 20203853 (+) True mon1bb
XM_039797431.1 mRNA upstream 216308 20197989 ~ 20202832 (+) False mon1bb
XM_039797429.1 mRNA upstream 216308 20197995 ~ 20202832 (+) False mon1bb
XM_039797433.1 mRNA upstream 223391 20190418 ~ 20195749 (+) True glyctk
XM_039798761.1 mRNA downstream 78133 20501629 ~ 20504671 (+) True ppcs
XM_039796684.1 mRNA downstream 100731 20524227 ~ 20546362 (+) False si:dkey-264d12.5
XM_039796680.1 mRNA downstream 100732 20524228 ~ 20546846 (+) True si:dkey-264d12.5
XM_039796681.1 mRNA downstream 100732 20524228 ~ 20546846 (+) False si:dkey-264d12.5
XM_039796683.1 mRNA downstream 100732 20524228 ~ 20546846 (+) False si:dkey-264d12.5
TU54259 other upstream 270450 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 495591 19917889 ~ 19923549 (+) False abhd14b
TU54184 other upstream 559799 19851548 ~ 19859341 (+) True cenps
XR_005638959.1 other upstream 787128 19617181 ~ 19632012 (+) False LOC120557344
XR_005638988.1 other downstream 1526880 21950376 ~ 21991799 (+) False itga7
TU55524 other downstream 3325414 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other downstream 3334262 23757758 ~ 23760951 (+) False cbfa2t2
TU56251 other downstream 5845106 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 6119011 26542507 ~ 26548799 (+) False G41850

Expression Profile