RNA id: TCONS_00003008


Basic Information

Item Value
RNA id TCONS_00003008
length 429
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_000030
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1315289 ~ 1342237 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTATATCCTTAGTATACGATGTTTTATTCATCCAACTCGAAATATAAGTCAGTCGTACATTACAGAATCCTGCGAGCTCCAGCTGTGTGAAGATTTTAACAAGGCTGGTCTGTTGTGGTCAAGGTGCCAGAAGCCCAAAATGTGATGGAGCGAGACAGATGGTGCCGAGGTGCTGATATGCATTGGAATATGTTTCATTACTGCTGCCGGCTGTCCAGTTTTACCCTACCGCCACCACATTGGCACACACTGATGCCAGTCTGCCGTTCTCCCCAAATCTGTCTAAATGACAACTGACCCGCTTTGGCTGGACGTCCTGGAACAAATGCTCCAAAAGGACAGACATCAGTAACCTCCACCCAACAAGATCCTTAATTATAATAAACCTGCCGACACACGAGACGCCACTTCCGTTAATTAAATTAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003007 lncRNA upstream 281651 1015812 ~ 1033638 (+) False XLOC_000028
TCONS_00002805 lncRNA upstream 291955 1015824 ~ 1023334 (+) True XLOC_000028
TCONS_00003006 lncRNA upstream 403738 794976 ~ 911551 (+) True XLOC_000026
TCONS_00003005 lncRNA upstream 417109 794976 ~ 898180 (+) False XLOC_000026
TCONS_00000055 lncRNA upstream 728788 580688 ~ 586501 (+) True XLOC_000023
TCONS_00003010 lncRNA downstream 36778 1358731 ~ 1360451 (+) False XLOC_000031
TCONS_00003011 lncRNA downstream 36944 1358897 ~ 1360831 (+) True XLOC_000031
TCONS_00002806 lncRNA downstream 249894 1571847 ~ 1576390 (+) False XLOC_000032
TCONS_00002807 lncRNA downstream 249894 1571847 ~ 1578251 (+) False XLOC_000032
TCONS_00003014 lncRNA downstream 295250 1617203 ~ 1619314 (+) False XLOC_000034
TCONS_00000059 mRNA upstream 344338 961607 ~ 970951 (+) True XLOC_000027
TCONS_00000058 mRNA upstream 707042 604127 ~ 608247 (+) True XLOC_000025
TCONS_00000057 mRNA upstream 707234 594736 ~ 608055 (+) False XLOC_000025
TCONS_00000056 mRNA upstream 711892 594584 ~ 603397 (+) False XLOC_000025
TCONS_00000054 mRNA upstream 723958 580642 ~ 591331 (+) False XLOC_000023
TCONS_00000062 mRNA downstream 278026 1599979 ~ 1614500 (+) True XLOC_000033
TCONS_00000063 mRNA downstream 367822 1689775 ~ 1706159 (+) False XLOC_000035
TCONS_00000066 mRNA downstream 390187 1712140 ~ 1731564 (+) False XLOC_000036
TCONS_00000072 mRNA downstream 467404 1789357 ~ 1796832 (+) False XLOC_000036
TCONS_00000074 mRNA downstream 483341 1805294 ~ 1815660 (+) True XLOC_000037
TCONS_00000060 other upstream 96484 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000053 other upstream 738768 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000052 other upstream 769072 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000047 other upstream 799967 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000036 other upstream 1021395 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000061 other downstream 253530 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000067 other downstream 390200 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000068 other downstream 395744 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000069 other downstream 396658 1718611 ~ 1793371 (+) False XLOC_000036
TCONS_00000070 other downstream 397254 1719207 ~ 1732326 (+) False XLOC_000036

Expression Profile

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