RNA id: TU54621


Basic Information

Item Value
RNA id TU54621
length 1339
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G40592
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 20723222 ~ 20725950 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTTAATCAGAATATACAAAGCAGTGGCTGAACTAACCGAATGTCATTCTGGTTCTGAAAAAGGCAGTCTTGGACACAAAACTGGTCTACCCAGCCATAACATAAAACTCAttgaaaatgtaagaaaaacaaAGTATAAATGGTACAAACTTGCGTGGAATGCATACAGAACAAATGACCAAAGCTTTAAGATTTAAGAGGGGTTAATTTACATTGCAAAATCCTGCCTCCATAAAACAAGGTCAAGCAATTTTATCATGGAGGTGCAAGACAGAGCCCCTTTATTTATTTGCACCATCTGTTATGTTAACAGGGCAGCCAAGCCAAGGATTAACTAGCAGCTCAACACAAAAAATTATGCTTCAACTAATAATGCTAACAActgtccattagcccctgcttAAAACTTATCTTTGGTCCTTTAAGTGAATCTGAGAGGTCAACATGAGCCTTGGAGGTAAGCAGCTGCCTGTATGTATGAATCATCTGGTCAGCACTGACATAATAGAGATTGTGCTTCTAACATACCAATATAAAACCTCAAGAAATGAAAAAACTGATCTCATGGTGTGGCCCAATTTGTACAAGTagaaaaaaagctaattttaAAGACCaataaataacatttcataaaaaagGATGCAGGGCCACTATGTTTCAGGACTCCAGTGCAATATGGTAACATGGgaggaaacaaaaaaatatttctcaaaAAAGGTACAGAAAGCACAAGCTCTACAACAGGATGTTGACCAGGCTGGTAAGACAGTGCTGCAAACAAGTAGCAGGGTAGAGACCTAAGCCTTCACCTCATCCTCTTTTGAATCTCCATTTTCCTctgttttctgcttttttgtctCCACCTTTTcctcctcctcttcagctGCACGCTTCACAGGCTGTGCATCAGTCTCCTCAGCAGGGGGCGCCTCCTCTGCATCCCCATCTCCATTCTTGTGTTTCTCCTCTCCGTTTTTTCCCACTTTGTCACTGTGATCAgcaccatTGTGCCATTGGCAGGTGCGTCCCCGTTGTCggtcttcttctcctcctcctcctcctcctccttcttcttctccacttctacttctttcttctctttcagctcCTTGGCTGTAACCTCTGCAGTTGCGGTCGTGTCAACAGCTGTGTCGGCCATGGCTAATTTTGTAAATTAATTTAGATAATAATATTCCTGTTCAGAAAAAGATGTTTTATTTCTTGGCTCTTTGCCTTCGTGTGGATAGATGTCCAAAGGCGCTGAGAGAGAAATGGTGTCTGGCTGTCTCCGCTTTTCAGTCGAGTTCGTTGAAAATCCACTCTCGTTGGCTACAACGG

Function

GO: NA

KEGG:

id description
ko03450 Non-homologous end-joining

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54466 lncRNA upstream 191868 20491994 ~ 20531354 (+) True G40488
TU54439 lncRNA upstream 299726 20419140 ~ 20423496 (+) True G40479
TU54379 lncRNA upstream 456856 20265840 ~ 20266366 (+) True G40442
TU54370 lncRNA upstream 495406 20227337 ~ 20227816 (+) True G40433
TU54264 lncRNA upstream 565697 20156854 ~ 20157525 (+) True G40357
XR_005639032.1 lncRNA downstream 144 20726094 ~ 20731954 (+) True LOC120557890
XR_005639061.1 lncRNA downstream 41032 20766982 ~ 20767927 (+) True LOC120558155
TU54702 lncRNA downstream 213756 20939706 ~ 21004960 (+) True G40652
TU54755 lncRNA downstream 410836 21136786 ~ 21137939 (+) True G40698
TU54785 lncRNA downstream 473247 21199197 ~ 21202881 (+) True G40718
XM_039798557.1 mRNA upstream 329 20716388 ~ 20722893 (+) True slc45a1
XM_039798558.1 mRNA upstream 329 20716388 ~ 20722893 (+) False slc45a1
XM_039798560.1 mRNA upstream 329 20716388 ~ 20722893 (+) False slc45a1
XM_039799026.1 mRNA upstream 22298 20680988 ~ 20700924 (+) True mmel1
XM_039796277.1 mRNA upstream 52546 20663326 ~ 20670676 (+) True si:ch73-130a3.4
XM_039798385.1 mRNA downstream 52870 20778820 ~ 20785678 (+) True errfi1a
XM_039798386.1 mRNA downstream 56210 20782160 ~ 20785678 (+) False errfi1a
XM_039799089.1 mRNA downstream 116056 20842006 ~ 20888025 (+) False pax7a
XM_039799086.1 mRNA downstream 116588 20842538 ~ 20888025 (+) True pax7a
XM_039799088.1 mRNA downstream 116588 20842538 ~ 20888025 (+) False pax7a
TU54259 other upstream 574532 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 799673 19917889 ~ 19923549 (+) False abhd14b
TU54184 other upstream 863881 19851548 ~ 19859341 (+) True cenps
XR_005638959.1 other upstream 1091210 19617181 ~ 19632012 (+) False LOC120557344
XR_005638988.1 other downstream 1224426 21950376 ~ 21991799 (+) False itga7
TU55524 other downstream 3022960 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other downstream 3031808 23757758 ~ 23760951 (+) False cbfa2t2
TU56251 other downstream 5542652 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 5816557 26542507 ~ 26548799 (+) False G41850

Expression Profile