RNA id: TU55086


Basic Information

Item Value
RNA id TU55086
length 2371
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G40948
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 22389178 ~ 22425121 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tTAGAGTTGCAGAGTAATAACAGTTTAATAATGATATGTACACAGAATCATCTTTATTGAAAGTAGTGTCATGAGATACAACACTACTGTTTCTCAGCAGCTACAGAAGAAAGTACTGCATGCACTAAATCACACGCCATAAACAAACCAACCAACGCACACatgtacaaacaaacaaacacagacattttgcatctgtttttttcttctttaaaccaCCCTAGCATTCTTGTCATAATTATATTTCTGCATATTGAGGCTACAGTATCACATATTATTTACCTTGCCAGAAAATTTTCAATTTGGCTACAATTACTGTCAGACAAAACAGAACAATAAGTTCCACACTCATCCAAACATTCACAGCTCAGTATACAACCATACTGTAGTGCATGTCAGAGGAATAGTTGTTTTCTTTGTGGTTTTGATTGACTAACAGCAAATTGACAACAAAAGAAAGGCCATTCACATTTCAAAGCATGGTTTCTATAGGTTATGTAAACACACTCTATATGCTAAATGATAATGAAAGGGTTCTCAAGTTCAATGACATTTTTTACCCTTTGGAGAAAGTCAAACTGAAATACTGCAGTATTAGATACTCAGTGTAAAGTCTTGTGATAAGGAACAAAGAGAGAAACcataaagaaaataatgtgaTAAAGTGCTTCATGCATTTCTGATAAGCATTAAAATTATGAGAAGTGAGGGTCTGCCTGTGAGATTGAGATTACAGCTCGCAATTTTTGTAACATAATAATTTAGTATTTACAGGGTATCAGTAAAATACTTACTGGGTAACTTTAAGAGACAGATATGGGAAAGAAAGTACAGGGAAAGAAGACAAGATGTTAAAGTATAAGGGGGTAACAACTTTATGTTTAATTGGAAAACAGGACAACAGTGCCAATAATACAATAACATTTTTagttatcatttattttaaaatgataaaatattaACAAAGACTATTTAGTTTGGGGAAttatattgtaaaaaataatttaaatacaaagtacttattattataaatatggtGTGGATTATGTGTCACTAGCTAGGCAACAAAACTTTAGGCTTTACAGCCATTACAGCTGTAGCTATAAAATAACGATgtatatgtttttaaaaaatactGAAGAACAGTAGCTTTGGAATCGAGAAACAATTGTGGAGCCACTGAGAAAGATACTGAAGTTTTGTTGAAAAAGATACATTATAAAGTACAATGTGATGAGCTATTCCCCCCTTTCAGGTGTGTGCACTATGAAAGTCTATATATAAATCATATTTGATGCTTATTATAAAAGTACTTTTATATACTATGTTAAACGGCCAGACAAAGTTTAGCTCCTTTTCATGACACAGTTATTGTaaaacaacatactgtatgtgctaaGTCTGATGGTCCCCTGTCTGTATATTTCCAGGTCCCCCCTAAACACAAATTTGTAACTCTCTTATGTAGGCCTACTTCTCCCCTCATGCCTACTCAGTAAATAGTCCATAAGTATTACAAAATCTCTACATTATAATTTGCAGGCTGTAATCTAAAGCATTACTGGTCTGTTTTGTTAAAAGGATCGCAAAAAGTCAAAGAGTGAGATACTCTGCTAAGAAGAAACAGCCCCTGTTCTctcaaaataaacacataaacacataaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtgcatatACAGTCTGTCTACTGTACCCTTGACTCTCTCATCCTGACTGGCTGATCAGGAGGTCACAGAGAGAGTTTAAAGGGCGCTGTGACTAGGGTTGCACTGGGTTGGAACATTTTCAGTAAATTTCCATTAGAAATTAAGCTTGGGAATTTTGGAAGTTTGTGCacaatttcaattaaaaaagtCCTACCTTTTAATATTGAACTtatttgggggaggggggttcaGTTCATTTAACTGAATTGTAACCATGCAGTGCATTCAGTAGCACACTTTCCCATCACATGTACAGATCATTTGCCAAAGTACTTTTCCCAACGGATTATTTCTGGTCATGATATAGTAAAAGGTTGGTTTTCAATCTGCATATGAGATGATGAATTTAGCCTAAGCAGATAACCCctatatttccattttattcccGTTATTTACCATACATTCCAGGTAATTCCCATGAAAAGTTTCCACTTTGTATAATCCTGGAATTTTGCAACCCTAGGCATggccatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtgtgtgtaagtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638962.1 lncRNA upstream 91366 22294954 ~ 22297812 (+) True LOC120557379
TU55057 lncRNA upstream 114877 22274074 ~ 22274301 (+) True G40923
TU55035 lncRNA upstream 186442 22202126 ~ 22202736 (+) True G40904
TU54960 lncRNA upstream 455946 21911874 ~ 21933232 (+) True G40840
TU54965 lncRNA upstream 471367 21917243 ~ 21917811 (+) True G40842
TU55200 lncRNA downstream 129496 22554617 ~ 22554845 (+) True G41021
TU55222 lncRNA downstream 166551 22591672 ~ 22593083 (+) True G41040
TU55223 lncRNA downstream 170306 22595427 ~ 22596515 (+) True G41041
XR_005638895.1 lncRNA downstream 351120 22776241 ~ 22824156 (+) True LOC120556826
XR_005638894.1 lncRNA downstream 351690 22776811 ~ 22824156 (+) False LOC120556826
XM_039797084.1 mRNA upstream 18245 22355111 ~ 22370933 (+) False igsf8
XM_039797083.1 mRNA upstream 18245 22355112 ~ 22370933 (+) True igsf8
XM_039797642.1 mRNA upstream 79416 22298776 ~ 22309762 (+) True tespa1
XM_039797647.1 mRNA upstream 106195 22278582 ~ 22282983 (+) True LOC120557376
XM_039797631.1 mRNA upstream 136497 22221298 ~ 22252681 (+) False LOC120557368
XM_039798179.1 mRNA downstream 36370 22461491 ~ 22477265 (+) True dctn2
XM_039798180.1 mRNA downstream 36371 22461492 ~ 22477265 (+) False dctn2
XM_039796728.1 mRNA downstream 58075 22483196 ~ 22487568 (+) True ddit3
XM_039796722.1 mRNA downstream 82206 22507327 ~ 22554602 (+) True arhgap9
XM_039796721.1 mRNA downstream 82206 22507327 ~ 22554602 (+) False arhgap9
XR_005638988.1 other upstream 397379 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 2240488 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 2465629 19917889 ~ 19923549 (+) False abhd14b
TU54184 other upstream 2529837 19851548 ~ 19859341 (+) True cenps
XR_005638958.1 other upstream 2757172 19617181 ~ 19632006 (+) False LOC120557344
TU55524 other downstream 1323789 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other downstream 1332637 23757758 ~ 23760951 (+) False cbfa2t2
TU56251 other downstream 3843481 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 4117386 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 4117386 26542507 ~ 26548799 (+) False G41850

Expression Profile