RNA id: TU55200


Basic Information

Item Value
RNA id TU55200
length 229
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G41021
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 22554617 ~ 22554845 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTTGTACTGAGCGATGGGTTTGCGTGAGAGATAGTAGAAGTGTGTGGAGTTATGTGGGCCTCAGAGGCGCAGCGGGCGGAGTTATCCTCTGTGATTGGTGCAAATGCTGCTTTTAATAACCGAACAAAAGGGGAACTGGAAATGCATATGTTCAAAAAATGTGGATTTTCCCTAAAaaccctctcactctctcactttgtGGCTTTGGTAATTTTATATTGACTGTG

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0003008 system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55086 lncRNA upstream 129496 22389178 ~ 22425121 (+) True G40948
XR_005638962.1 lncRNA upstream 256805 22294954 ~ 22297812 (+) True LOC120557379
TU55057 lncRNA upstream 280316 22274074 ~ 22274301 (+) True G40923
TU55035 lncRNA upstream 351881 22202126 ~ 22202736 (+) True G40904
TU54960 lncRNA upstream 621385 21911874 ~ 21933232 (+) True G40840
TU55222 lncRNA downstream 36827 22591672 ~ 22593083 (+) True G41040
TU55223 lncRNA downstream 40582 22595427 ~ 22596515 (+) True G41041
XR_005638895.1 lncRNA downstream 221396 22776241 ~ 22824156 (+) True LOC120556826
XR_005638894.1 lncRNA downstream 221966 22776811 ~ 22824156 (+) False LOC120556826
XR_005638896.1 lncRNA downstream 221966 22776811 ~ 22824156 (+) False LOC120556826
XM_039796722.1 mRNA upstream 15 22507327 ~ 22554602 (+) True arhgap9
XM_039796721.1 mRNA upstream 15 22507327 ~ 22554602 (+) False arhgap9
XM_039796723.1 mRNA upstream 15 22507327 ~ 22554602 (+) False arhgap9
XM_039796726.1 mRNA upstream 15 22507327 ~ 22554602 (+) False arhgap9
XM_039796724.1 mRNA upstream 15 22507329 ~ 22554602 (+) False arhgap9
XM_039797406.1 mRNA downstream 121677 22676522 ~ 22753513 (+) True LOC120557262
XM_039797415.1 mRNA downstream 121677 22676522 ~ 22753513 (+) False LOC120557262
XM_039797411.1 mRNA downstream 121677 22676522 ~ 22753513 (+) False LOC120557262
XM_039797412.1 mRNA downstream 121677 22676522 ~ 22753513 (+) False LOC120557262
XM_039797418.1 mRNA downstream 121677 22676522 ~ 22753513 (+) False LOC120557262
XR_005638988.1 other upstream 562818 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 2405927 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 2631068 19917889 ~ 19923549 (+) False abhd14b
TU54184 other upstream 2695276 19851548 ~ 19859341 (+) True cenps
XR_005638958.1 other upstream 2922611 19617181 ~ 19632006 (+) False LOC120557344
TU55524 other downstream 1194065 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other downstream 1202913 23757758 ~ 23760951 (+) False cbfa2t2
TU56251 other downstream 3713757 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 3987662 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 3987662 26542507 ~ 26548799 (+) False G41850

Expression Profile