RNA id: XM_039798035.1


Basic Information

Item Value
RNA id XM_039798035.1
length 1922
RNA type mRNA
GC content 0.58
exon number 11
gene id cbfa2t2
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 23734948 ~ 23771932 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTAGTAGATGCTCTGTAGAGAAGATACACTGAAGGATTTTGATCGTATCAGCCATAATTCTGACAAGAGGAAGAGAACTCAAAGACAGAGGAGCATGGTCGGAATGCCGAGTGCTTTAAATTaCAGTAGAGAGAAGAAGACCCCTGCCATGCCCGGTTCTCCTGTGGATGCTAAGACTCATTCCAGATCAGCCCCCAGCAGCAGCGCCAGCTCCACTATGCCACCCCTGCCTTCTGTCAACCCCAGCGGCCCTCGCCCGGCCTCCTTTTCCACCACAGCATTGACCAATGGGAATCATCATTCCCCACCAACCCTGAATGCAGTGCCATCTCCTCCGCAGCGTTACAGCAACGGAccgtcctcttcctcttcctcatcgcTGGCCAACCAGCAGCTGCCAGCCACCTGTGGGGCTCGCCAGCTGAGCAGcactttcccccccccccccccccgtttccccccccccccctccccccgatTGCAAAACAGCGTCCGAAGCCTGGTTCTGGCCCTCGTGAATTCGACAGTTACCATTGAGGAGTTCCATTCACGGCTTCAGGAGGCCACCAACTTCCCTTTACGGCCCTTTGTTATTCCTTTTCTCAAGGCAAACCTTCCACTTCTGCAGAGGGAGCTACTCCACTGTGCACGGGCAGCCAAGCAGACCCCGGCCCAGTACCTGTCCCAGCATGAGCATCTCCTGCTGAGCACTACCATGGCCTCCTCGCCAGACTCCTCTGAGCTGCTGATGGAGCCTCCGGAGGCTGTTACCAAGAGACACAGCCCCAACAGAGCTAAAGAGAATGGTTTCCACGAACGTCCACCCGCAGCCATGGAGCCCGCCGCAAAACGAATTTGCACCATTAGCCCTGCTCCCCGACACAGCCCCGCCCACCCGCTGCCCCTCAGCGCCCAGCTTCACCCGACCCCTCCACCCTTGCAGCACTATGCCCTAGATGACATCGCAACGCCACACATCCTACACCGCGAGCACAGCCAACGCATGTTGGAGATCCGCGAGCTCAAAGACAGGCCCAGACTCCCTGGCACTAACGGAGGCTACCGCGAGGAGCCAGTGGaccacagactgacagacagagagtggGCTGATGAATGGAGGCATCTGGACCATGTGCTGAACTGCATTGTGGACATGGTGGAAAAGACACGGAGGTCAGTGAGCGTGCTCAGACGATGCCAGGAGTCAGATCGCGAAGAGCTCAACTACTGGAGACGGCGTTCAAACGAGCAGGAGGACCCTCGCAAAGGCGGCTCAGGCTCGGCTCCCTTCTCAAAGACACACAGCCCCCACTCTGCAGAGTCGGACTCCCAGCGCGACTTTGCTCCACGGCCAGGCTCAGCATACGTTACAGATGAGATCTGGAGGAAAGCTGAAGAAGCGGTGAATGAGGTGAAGCGCCAGGCCATGGATGAGGTTCAGAAGGCAGTAGCAGAGGCTGAGCAGAAGGCTTTTGAAATGATTGCTTCTGAGAGGGCTAAAATGGAAAAGACTCTGGCTGACGCGAAGAAGAAGGCTCAAGAGGATGCCATCATGGTCATCAATGAGCAGGAGGATTCCAGTGAGTGTTGCTGGAATTGTGGCCGCAAAGCCAGCGAGACGTGCAGCGGCTGCAATGCCGCTCGCTACTGCGGCTCCTTCTGCCAGCACAAAGACTGGGAGAGGCATCACCTCATCTGCAGCCCAGGACTTCAGGCTCAACCCAAACCAGTTTCCGCCATCACCGCAAgcagggcagcagcagcagcagcagccggggTGTCTCCTGTCAGTCTGGTCGGGGTCAAGGCCCCCGACAGCGTTTCTTCAGTCTCCAGTCCTGGGGGAGAGAAGGCTTTGGTCGCTTCTCGCTCCTCCACCCCTTCCACCCCCGCCTCGGCCCCTGAGACCAACGGACACTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55482 lncRNA upstream 366597 23367385 ~ 23368351 (+) True G41231
TU55469 lncRNA upstream 376863 23337333 ~ 23358085 (+) True G41220
TU55451 lncRNA upstream 453755 23280937 ~ 23281193 (+) True G41207
TU55353 lncRNA upstream 479421 23254942 ~ 23255527 (+) True G41126
TU55349 lncRNA upstream 502056 23232203 ~ 23232892 (+) False LOC120557222
TU55551 lncRNA downstream 66286 23836698 ~ 23836903 (+) True G41291
TU55574 lncRNA downstream 76381 23846793 ~ 23847938 (+) True G41308
TU55573 lncRNA downstream 77980 23848392 ~ 23852129 (+) False znfx1
XR_005638903.1 lncRNA downstream 97959 23868371 ~ 23870584 (+) True LOC120556870
TU55615 lncRNA downstream 505648 24276060 ~ 24276910 (+) True G41346
XM_039798564.1 mRNA upstream 69335 23571602 ~ 23665613 (+) False tox2
XM_039798562.1 mRNA upstream 69335 23571894 ~ 23665613 (+) True tox2
XM_039798563.1 mRNA upstream 69335 23571894 ~ 23665613 (+) False tox2
XM_039798566.1 mRNA upstream 69335 23571894 ~ 23665613 (+) False tox2
XM_039798567.1 mRNA upstream 69335 23571894 ~ 23665613 (+) False tox2
XM_039798933.1 mRNA downstream 55314 23825726 ~ 23835968 (+) True rbck1
XM_039797087.1 mRNA downstream 77635 23848047 ~ 23867512 (+) True znfx1
XM_039797088.1 mRNA downstream 77635 23848047 ~ 23866931 (+) False znfx1
XM_039798916.1 mRNA downstream 201981 23972393 ~ 24165819 (+) True LOC120558070
XM_039798919.1 mRNA downstream 217004 23987416 ~ 24165819 (+) False LOC120558070
XR_005638988.1 other upstream 1743149 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 3586258 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 3811399 19917889 ~ 19923549 (+) False abhd14b
TU54184 other upstream 3875607 19851548 ~ 19859341 (+) True cenps
XR_005638958.1 other upstream 4102942 19617181 ~ 19632006 (+) False LOC120557344
TU56251 other downstream 2498190 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 2772095 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 2772095 26542507 ~ 26548799 (+) False G41850
XR_005639013.1 other downstream 2882848 26653260 ~ 26698571 (+) False anks1ab
TU57106 other downstream 5470001 29240413 ~ 29242253 (+) True G42449

Expression Profile