RNA id: XM_039798036.1


Basic Information

Item Value
RNA id XM_039798036.1
length 3319
RNA type mRNA
GC content 0.51
exon number 10
gene id cbfa2t2
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 23734948 ~ 23771932 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aCAGTAGAGAGAAGAAGACCCCTGCCATGCCCGGTTCTCCTGTGGATGCTAAGACTCATTCCAGATCAGCCCCCAGCAGCAGCGCCAGCTCCACTATGCCACCCCTGCCTTCTGTCAACCCCAGCGGCCCTCGCCCGGCCTCCTTTTCCACCACAGCATTGACCAATGGGAATCATCATTCCCCACCAACCCTGAATGCAGTGCCATCTCCTCCGCAGCGTTACAGCAACGGAccgtcctcttcctcttcctcatcgcTGGCCAACCAGCAGCTGCCAGCCACCTGTGGGGCTCGCCAGCTGAGCAGcactttcccccccccccccccccgtttccccccccccccctccccccgatTGCAAAACAGCGTCCGAAGCCTGGTTCTGGCCCTCGTGAATTCGACAGTTACCATTGAGGAGTTCCATTCACGGCTTCAGGAGGCCACCAACTTCCCTTTACGGCCCTTTGTTATTCCTTTTCTCAAGGCAAACCTTCCACTTCTGCAGAGGGAGCTACTCCACTGTGCACGGGCAGCCAAGCAGACCCCGGCCCAGTACCTGTCCCAGCATGAGCATCTCCTGCTGAGCACTACCATGGCCTCCTCGCCAGACTCCTCTGAGCTGCTGATGGAGCCTCCGGAGGCTGTTACCAAGAGACACAGCCCCAACAGAGCTAAAGAGAATGGTTTCCACGAACGTCCACCCGCAGCCATGGAGCCCGCCGCAAAACGAATTTGCACCATTAGCCCTGCTCCCCGACACAGCCCCGCCCACCCGCTGCCCCTCAGCGCCCAGCTTCACCCGACCCCTCCACCCTTGCAGCACTATGCCCTAGATGACATCGCAACGCCACACATCCTACACCGCGAGCACAGCCAACGCATGTTGGAGATCCGCGAGCTCAAAGACAGGCCCAGACTCCCTGGCACTAACGGAGGCTACCGCGAGGAGCCAGTGGaccacagactgacagacagagagtggGCTGATGAATGGAGGCATCTGGACCATGTGCTGAACTGCATTGTGGACATGGTGGAAAAGACACGGAGGTCAGTGAGCGTGCTCAGACGATGCCAGGAGTCAGATCGCGAAGAGCTCAACTACTGGAGACGGCGTTCAAACGAGCAGGAGGACCCTCGCAAAGGCGGCTCAGGCTCGGCTCCCTTCTCAAAGACACACAGCCCCCACTCTGCAGAGTCGGACTCCCAGCGCGACTTTGCTCCACGGCCAGGCTCAGCATACGTTACAGATGAGATCTGGAGGAAAGCTGAAGAAGCGGTGAATGAGGTGAAGCGCCAGGCCATGGATGAGGTTCAGAAGGCAGTAGCAGAGGCTGAGCAGAAGGCTTTTGAAATGATTGCTTCTGAGAGGGCTAAAATGGAAAAGACTCTGGCTGACGCGAAGAAGAAGGCTCAAGAGGATGCCATCATGGTCATCAATGAGCAGGAGGATTCCAGTGAGTGTTGCTGGAATTGTGGCCGCAAAGCCAGCGAGACGTGCAGCGGCTGCAATGCCGCTCGCTACTGCGGCTCCTTCTGCCAGCACAAAGACTGGGAGAGGCATCACCTCATCTGCAGCCCAGGACTTCAGGCTCAACCCAAACCAGTTTCCGCCATCACCGCAAgcagggcagcagcagcagcagcagccggggTGTCTCCTGTCAGTCTGGTCGGGGTCAAGGCCCCCGACAGCGTTTCTTCAGTCTCCAGTCCTGGGGGAGAGAAGGCTTTGGTCGCTTCTCGCTCCTCCACCCCTTCCACCCCCGCCTCGGCCCCTGAGACCAACGGACACTAGGAGGTGAAGGACATCAGTGGTGAACGTGTCACCTATCCTCTTTCTTACCGGGGAAGAATTGAATCCGCAGCAAGAGGAAACTATTTGTGGGTTAAGTTAGGATACCAGATTTTTCATCATACTCTTTGGCAGAAAGAAAAGGACAGATTATGGATGACTGTTTGAGTGATATGTCAACTGGGACTTTGGCTTTGGCAAAGAACAGAAGGACTCGTCTCGAATGCATCTATTGGATGAACAGATCTCCCCGAACAGATGGAAACGTGTCTGTCGTCGTCCAAAAACCCCAAATCTTGGATCTGCGAGGGGCTGAAAAAAACTGACGATTGATCTGAGTGTATCTCCGGCCGCGGGGAGGAAGTTATAAAGGGGAGACATATGAGAAAAGACAgaggagattaaaaaaaacccccccccaatATTCTCACTTTGATGTCTATAGATTTAAGATagggaggtggtggtggaaaaTGTAAACAGTGTAATAGTACCAGCCATAAAGCATCTGTCTTCGTCCTGTAGGAAAAATCTGACCGTAGACCGTAAGAGTCGTCtctgcagctcctcctcctGTATACATAAATATCTGCTCGCCAACTTCTTGTCAGGTTTTTCATGTGTGAATGCGTGTGTCAAACGGTTGTGCCGTCAGTGAATATTGTACAGCATATGATAACTTTTGTCAAAGCAATATTAAAGTGAAGTGTTCAGGTATCACAAGCCGTTTCTGCATCACCAAAGTTTTTAGTCGCTAAAGAGAGAGTCGTCCTTGCCTGTAAATGTCCTTGTGAATCAGAGATAATTATACACTAACCCCACATCATATGTACTTTTATAATGACTCTGGTCACTATTTTAAATGTCTGATCATCAGTCATCTTcaaagaacagagagaaaggTGATGGTGATTGGATGAAGTAAGCgcaggaagaaggaaggaaggcagaaGATGAAGTTAAGACTTTATTGTGGTTGCGGTTTCATTTTGGCACTTGTTTGCGTCACCAGTTTGTGTGTATGGCGGGATCGGATGTTGCTCCAAATCTTACATCGTTGCAATATTTGCATCGGACAGCTTTTCAAGTACAGTTTTTTAACAAAAGGAGAGATAAGGGGTGACAATTAAATCTGTTTTACTTCATTTGAAATCATCTAAAGGGAGAAAATTCTCACTGGTTGCTTACATTGCCTCGGTGAAGTTTTAGAGCAGCGACTCTGTCCCACGGAGAATCTCAGGAGCAAAACTGTATTTGTATGCACAGatcattctgtttttcttttgtcgCAGTTAGGTTCAAGTCAAAAGTTTATTGTAGTCTGCTGTTACGACTGagacattgtttttgtttttcgttCGTTGTAAGATGACTTTGTAAAGAATATTATGAGAGAATGCCTTTATTTTGTGAGCCACgattttctttgttctttaaaCACGTTCTTTTGTTATGAGGCATAACTTCATATGAAAAAGATATCTTGACATGAAGtatgaaataaagaaatagaactacttcaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K22751 CBFA2T2; CBFA2/RUNX1 translocation partner 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55482 lncRNA upstream 392061 23367385 ~ 23368351 (+) True G41231
TU55469 lncRNA upstream 402327 23337333 ~ 23358085 (+) True G41220
TU55451 lncRNA upstream 479219 23280937 ~ 23281193 (+) True G41207
TU55353 lncRNA upstream 504885 23254942 ~ 23255527 (+) True G41126
TU55349 lncRNA upstream 527520 23232203 ~ 23232892 (+) False LOC120557222
TU55551 lncRNA downstream 64766 23836698 ~ 23836903 (+) True G41291
TU55574 lncRNA downstream 74861 23846793 ~ 23847938 (+) True G41308
TU55573 lncRNA downstream 76460 23848392 ~ 23852129 (+) False znfx1
XR_005638903.1 lncRNA downstream 96439 23868371 ~ 23870584 (+) True LOC120556870
TU55615 lncRNA downstream 504128 24276060 ~ 24276910 (+) True G41346
XM_039798564.1 mRNA upstream 94799 23571602 ~ 23665613 (+) False tox2
XM_039798933.1 mRNA downstream 53794 23825726 ~ 23835968 (+) True rbck1
XM_039797087.1 mRNA downstream 76115 23848047 ~ 23867512 (+) True znfx1
XM_039797088.1 mRNA downstream 76115 23848047 ~ 23866931 (+) False znfx1
XM_039798916.1 mRNA downstream 200461 23972393 ~ 24165819 (+) True LOC120558070
XM_039798919.1 mRNA downstream 215484 23987416 ~ 24165819 (+) False LOC120558070
XR_005638988.1 other upstream 1768613 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 3611722 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 3836863 19917889 ~ 19923549 (+) False abhd14b
TU54184 other upstream 3901071 19851548 ~ 19859341 (+) True cenps
XR_005638958.1 other upstream 4128406 19617181 ~ 19632006 (+) False LOC120557344
TU56251 other downstream 2496670 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 2770575 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 2770575 26542507 ~ 26548799 (+) False G41850
XR_005639013.1 other downstream 2881328 26653260 ~ 26698571 (+) False anks1ab
TU57106 other downstream 5468481 29240413 ~ 29242253 (+) True G42449

Expression Profile