RNA id: XM_039797088.1



Basic Information


Item Value
RNA id XM_039797088.1
length 6541
RNA type mRNA
GC content 0.50
exon number 19
gene id znfx1
representative False

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 23848047 ~ 23867512 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tattttacatacaaaacatgttAACTTATAAACGAGCtacaaaaattaattaaatactgCTCAATAAttatcgttagctagctagctaatcacACGTACTCTTTGATCACAATACGATAACATGCCTGTATGACTGAGCCATTCTGCTGTGTTAAATGTCTTATTAATTTTGCTTATATTAGGCCTAATTCCATGGCACTGTACTGCTCGTAGCCATATGGCGTTAGCTACATACTAAACTGTTCTGCAACTTTTTATGTGTGCTGATGTTACCTGACGTGCCTCTTAGTCATAAACAAATGCATGTAGTACACTTCTAGGTGTGGTGTGTTCTGTTTAAAACGAAAACGAAACGGACAGACAGTGCCTATAAAAAGCAGCTCCTTGAACTGAGCAGTGTGAGCAGCAGGCACAGCTGAGACAGCGACTACCGACGGAAGGATGGTGCTGTAATGATCGCAAATAGGCCTGCCTGTTTCTTTTGTAAAGCTTGATGTGGAAATATTAATGTCAAGTGGATTTCAGTCTAGAAACTGCCGTATGCACAAGCAAGACCATGGAAAGACCGACTTCAAAAACGGGGAGTAGAGGACCTAGCAAtgGTGCTGATActggccaaaatgaaaatgctaGTGGAGACAGcgggaaacaaagaaaaagagcaCAAAGTCGTGGGAGTAACCAAGCTAAAAGGGAGGAGACCGATGGAGGAGGAGTAGGTGTCGGGATGTGTTGGAGAggcagaagaagaggaggaccAGACCCAGGAAGAGGGGGTGAAAGAGGTGCAGGAGGAGAAGGCAGGAAGGAGACAGATGGGGGAGGAGGATGGGAaggggggagaggaagagggggagcagcaggcagaggaagaggagcaggtgcagggagaggaagaggaggagcagcagatgcagagagaggaagaggatcaGCAGCAGATgcagggagacagggaggaggagCCAGACCGAGAGTAGGTGGGAGGGGGAGAGGTGGAAATGGAGGAGAAGGGGCAGAGAGAGGTGGGGTAAGAAGAAATGGAGAGCAAGGTGCACCTGAAAGAGAAGGAGCAAGAAGGGGGATGGCAGGAATGGGTGCAAGCAGAGCAGGACATAGTGTGGATAGAAGGGGTGAGAGAAGAGATAATGTGGGAGACAGGCAagagagaaatggagggagATCCAATTCTACTGGCAGAGTCTGGGCACCGAAGGGTCATAGACTGGGCTATAAAGCACTGGAAGAACTCTCTGGGGAAGATCCATCTGTAGTGGCCATCACCCTGTCCTCTCACCCTGGCCTTCAGGAGGTCCTGCGCGAGACACAAATGAGGCAGGACCTTGTCGAACTCCTCTGCCTGGTGCTGAGTAAAGCCTTCAAATCACATACAGAAAGAGGCACCCTGCAGCACCTGGCTGGCATCATAAAAGATTCTGGGTTCTTCCGCACCATCCTGCCCCACTATCTGGGGGGCATGAGGTCAGAGTTCAACCCCGTCCGCAGGGCACAGTACCCACAGCACCTGGAAAACATCCTGGCTATTCTGTCAAAGGTCCTCAGCATCTTTCCTGCTAGCTCTATCGAGGCTGTGAGCTTGCTACTGACGGTGCTCAATGCCTCCATCAACAGCCTGAGGGCAAAAGGAGTGGACATCCAGCCTGAAACGGAGGAGAGCGTGGATAGTATTCAGAGCCTGATCAAGCACCTCGAGGAGAGATCCTCGGAGGGTACCCTACGCTCAGACAAGGACACTTATGCCCTCCTACCCACTGGAGGTGATAACCCAGGTGACGAAGAGCAGCAAGATTTCAGGACCATATCCATCTACCCAACTCCTAAGGAGTTCCATCAGGAACACAGGCCCTTTCTTAGACCCAACCTCACTTTTCAGCGCTACACAAACACCCACGTCTACCTTGACACGCACTTCCGGCTGCTGAGAGAGGACTTTGTGCGGCCACTCCGTGAGGGGATCCAGCAATTGCTTCGGGACCAAATGGACAAGGGGAGGAGTGATAATCCACTGAAGATGAAGCGCTTTGATGACATCAGAGTGTATTTGGACACAAAAGTGGTGGTGCCCCAGTGCACGCCGACTGGCCTTGCCTACATAGTCCAGTTTGACATTAAGCCACTTAAGTTTGTGGTCTGGCAGAACTCCAAGAGGCTGATCTATGGGTCCCTGGTCTGCCTGTCGTGTGATAATTTTGAGAGCTTCTTATTTGCCACAGTGTCCGATCGGGACCCCAAACAGCTGCGGAAGGGACAGGTCCAGATTGCCTTTACTGAAGAAAGCAGAGCGAAGTTGGCCAGAATTGAGaaagatCAATCGTTCCTGATGATTGAGACCACTGCCTACTTTGAGGCCTATCGCTATGTTCTAGAGGGCCtacaggagcaggaggaggacaaCCTGCCCTTTCAGAGGTACATCGTGGAGTGCAGCACAGACGTGCATCCCCCAGCTTATCTGCGGAGAATAGATGTTTATGACCTGTCATCTGTTGCTCACCCTGACCATAAGGACGGTATGCTGCCCTTTCACTGCCTGGAGGCACCGGCCTGGCCGAGCATGGAGAAGCTGGGACTGGATGAGTCTCAGATGAGAGCTTTTCAGCTGGCCCTTACAAAGGAGCTGACCATCATACAGGGACCTCCTGGCACTGGAAAAACCTACGTTGGCCTTAAGATTGCTCAGGCTCTGTTGGCAAATCAGGATATTTGGAGAGGCAATGCTCCGATGCTGGTAGTGTGTTACACTAACCATGCCCTGGATCAGTTCCTTGAGGGTATTCATACATTTCTGCCAGAGGGGATAGTGAGAGTAGGAGGCCGCAGCAACAGTGAGATCCTGAAGCGTTTCAATCTAAGGGAGCTGACCCGCTCACATGGCTTCAGACAGAAGCTGCCGTCTCACCTGCGTGTAGCATATAATCAGATTTACAGGCAGCTGTgtgagaaggagagggagatcCAGAGTCAGAGCATGAAGCTGGAGTGTTCTCTGAAAGGCGTCCTGCGTGAAGTCTTCTTGCGCAACTTTATTTCTTCCAGACACTGGGACAATCTACACAACCAACCACCAACACCAGATGATTTTGTGACCTGGGGTGAGAAGAAGTCCAGTCTGATGATGGAGTGGTTGGGTATCGGTTCCACCGTCTTCctgcagagggagacagagaatgCAAATATAAATGAAGcagaagaagagatGGAGCTGGATGAGGAGGACGACCTCATTGAAATCGCAGAGGAAGCAGATCTGATCCAGGCAGAGCGGATTATTGAAGACAACATTGGTCCCAAAGGTGGTAGAGATGGCAAAAGGAACGGAGACATGGCGGAGGCTGTCAGAGCGGTAGAGGAACTGATGCTGGCTATGAACCTGGATAAAACTGAAATACAGGCCGAGCAGAGCGAGGAAGGATGGGAGATGCAACGGGCCCAGAAAAGAAAGCTGAAGAACAAAATCAGGAAAGAGCTTAGGAATAGCTCGGTCATGACTAAAGAAGAGGAAGATGCTGTCTTGGATATTTGGACCCTCAGCCAGCCGGACAGATGGAGACTCTATCGGTTGTGGGTGGCACGTTATAGGCTAGAACTTTGCGCCAGAATCCTAGAGACTGAAGAGGATTATCAGAATGCAGTGGACAGATTGGCTGATGTAAAACGTGAGGAGAACTTCTGTCTCCTGAAGGAAGCCACGGTTATTGGCATGACAACAACTGGGGCAGCCAAGTTCCGTAAAGTTCTGCAGAAAGTGCGTCCACGTCTGGTGATTGTAGAAGAGGCTGCAGAGGTTCTCGAGGCCCACACCATCACCACACTGAGCCAAGCATGCCAACACCTCATCCTCATCGGAGACCATCAGCAGctGCGCCCCAGTGCCACAGTATATGAACTTGCTAAGAACTTCAACCTGGAGATGTCCATGTTTGAGAGGCTGGTGAACATGGGACTTCCTTTTGTCAGACTCAACTACCagcatcgtatGAAGCCAGAAATTGCCCGTCTTCTGACCCCACACATCTACACAGAGCTGGAAAACCATCCCTCGGTGTTGGACTATGACAATATTAAGGGCCTAAATACCAATTTATTCTTTGTGGAGCACAACCACCTAGAAGAAGAGATTAAAGATGGGAAAAGCCATCAGAACAAACATGAGGCAATGTTTGTAGTCTCTCTTTGCCGCTATCTTATCTTTCAGGACTACAAACCAGAGCAAATTACCATCCTCACGACCTATACCGGGCAGCTCCACTGCCTGCGCAATCTCATGCCTGCCAGCGAGTTCACAGGGGTCAAAGTGCATGTAGTGGACAAGTACCAGGGAGAAGAGAATGACATTGTCTTGTTGTCTCTGGTCCGCAGCAACCGGCAGGGTAAAGTTGGCTTTTTGAACATTCCCAATCGAGTCTGCGTAGCCTTGTCTCGCGCCAAAAAAGGTCTCTACTGCATTGGCAATAAGTCAATGCTGAGCCAAGTCAAACTGTGGAGCAACATCTTCCACACCCTGGAGGAGAAGGACCAGGTTGGGAGTGCTCTGACCCTGTGCTGTCAGAATCATCCAGATCGACAGGTAAAAGCCTCTTGTGCTGATGATTTCAAACTAGCCCCTGAGGGGGGCTGCACCAAGCCTTGTGAGTTCCGTTTGGAATGTGGCCATGTTTGCTCACGTGTCTGCCACCCCTATGACCCGGAGCACAAGAAGTACCAGTGTCTTAAAAAGTGCCAGAAGATTTTATGTGATCTGGGACACAGGTGCACCCTTCTGTGTCATAAAGAATGCCCAGAGAAATGTCCAGTGAAGGTTGAGAAGATCATACCCCAGTGTCAACATACTCAGATGGTTCCTTGCCACAGGGACCCGCAGACATTCATATGCAAGGAGCCTTGCCAGAAGCTGCTTCCATGTGGGCATCCATGTGATTCATTGTGTGGGGAAAAATGCACCAGTCAGTGCAAGGTGAAGGTCACCTTAAAACTAAAGTGTGGCCACAGCCAGCAAGATGCGTGCTTTTACAAAACTCACATAGAGCAGCCTGAATGTAGGACCCCTTGTGAGGAACAGCTAAAATGTGGCCATCCCTGTCATGGTAACTGTGGCAAGTGTTATCAGGGACGGTTCCATTACCCATGTTTTCACCATTGTGACCGTCTCCTGATTTGCTCTCACAAGTGCAGGGAGCCTTGCACTCGCGATTGCCCCCCCTGTCAGGAACCATGTGAGAATTGCTGCGTGCACAGCAAGTGTATGAAGCCATGTGGACAGCCCTGTGCTCCCTGCATTGAGCCCTGCGCTTGGCAGTGCCCTCACCAAAGCTGCAGTAAGCTTTGCTATGAGCCATGCGATCGTCTGCCATGCACCCAACCCTGTGCCAAGACGCTGGATTGCGGCCACCCATGCATTGGTCTGTGTGGAGACAAATGTCCAAGCAAATGTCGCATCTGTAATCACGATGAGGTCACAGAGATTTTCTTCGGCACTGAGGATGAGCCTGAGGCTTTGTTCATTCAGCTAGAGGACTGTGGACACATCATTGAATACACAGCCATGGACCAATACATGGGGATGGATGACAACCAGCTGGCAAATGAAGGAGAACAGGTGGCCATCAAACTGAAGGAATGTCCAAAGTGTCGAACACCAATCCGCAAGAATCTACGCTATGGATCTCACGTCAACCGCAGCCTGTCTGAAATAGAGATGGTAAAGGTGAAGATAAACGGACGTCAGTTGGATATTGAAGAGCACAGGAAGGCCCTTCAAAATCAGTGGAAGGACAACCTTCTCCTCCATGAAATGCATCACCAAGAAGAATATATGTGTATCAGTAACAAACTGGAAAGCAAATATCTCACAGCAAAACATCTGTGGGTCCTGGAAAACAAGATGGACTTCCTAATAAGAGTTGCAAAGCTGAAGAAGGTCCAAAGGGAAAACATGTCAGCCATGCATAGCAACAGATTAGGAAAGTATTTTGAGGAGTTTGAGCACTGGCTCAACAACTGGCACCAAAAATTCACAGACCAGCAGGTCTTTGATTTGCAGAGAGAGCTACGGAGAATCACCCTCCTGACTGAACTCAACACCCGTTGCCATATGGCAGAGATGAGaggacaaagtgacaaaatcaaTACCGAGGTACAAACCATAACCCAGGTTTTGGAAAAGTTTGGCCAATTTACTGAACAAGACCAATTGCGAGTAGAAGAAGCCATGAAGGAATTAGACAACATTCTTCCACCCACAGGTTTAAGGATcaatgaggaggagagaaagatgaTTGTCTCGGCTATGGGAATGCGGCCTGGACACTGGTACAAATGTCCCAATGGCCATGTATATGTTATAGCCGATTGTGGAGGGGCTATGGAGAGCCGACGCTGCCCGGATTGTGACGCTACTATTGGTGGGGGCAATCACAGATTGGCAAGTGGAAACCAAGTCGCCTCAGAGATGGATGGGGCACAGCACCCTGCTTGGTCTGAGAACAACAACCTTCTAAACTTTGATCAACTTGACTTCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU55574 lncRNA upstream 109 23846793 ~ 23847938 (+) True G41308
TU55551 lncRNA upstream 11144 23836698 ~ 23836903 (+) True G41291
TU55482 lncRNA upstream 479696 23367385 ~ 23368351 (+) True G41231
TU55469 lncRNA upstream 489962 23337333 ~ 23358085 (+) True G41220
TU55451 lncRNA upstream 566854 23280937 ~ 23281193 (+) True G41207
XR_005638903.1 lncRNA downstream 1440 23868371 ~ 23870584 (+) True LOC120556870
TU55615 lncRNA downstream 409129 24276060 ~ 24276910 (+) True G41346
TU55624 lncRNA downstream 552270 24419201 ~ 24421883 (+) True G41354
TU55631 lncRNA downstream 569451 24436382 ~ 24437700 (+) False G41360
TU55632 lncRNA downstream 569451 24436382 ~ 24451569 (+) True G41360
XM_039798933.1 mRNA upstream 12079 23825726 ~ 23835968 (+) True rbck1
XM_039798036.1 mRNA upstream 76115 23760412 ~ 23771932 (+) True cbfa2t2
XM_039798035.1 mRNA upstream 77635 23734948 ~ 23770412 (+) False cbfa2t2
XM_039798916.1 mRNA downstream 105462 23972393 ~ 24165819 (+) True LOC120558070
XM_039798919.1 mRNA downstream 120485 23987416 ~ 24165819 (+) False LOC120558070
XM_039798918.1 mRNA downstream 145598 24012529 ~ 24165819 (+) False LOC120558070
XM_039798920.1 mRNA downstream 157291 24024222 ~ 24165819 (+) False LOC120558070
XM_039798350.1 mRNA downstream 574381 24441312 ~ 24449369 (+) True gcnt7
TU55524 other upstream 87096 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other upstream 87096 23757758 ~ 23760951 (+) False cbfa2t2
XR_005638988.1 other upstream 1856248 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 3699357 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 3924498 19917889 ~ 19923549 (+) False abhd14b
TU56251 other downstream 2401671 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 2675576 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 2675576 26542507 ~ 26548799 (+) False G41850
XR_005639013.1 other downstream 2786329 26653260 ~ 26698571 (+) False anks1ab
TU57106 other downstream 5373482 29240413 ~ 29242253 (+) True G42449

Expression Profile