RNA id: TU55615


Basic Information

Item Value
RNA id TU55615
length 202
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G41346
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24276060 ~ 24276910 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aatgatatttgaattgtaaaaaggaaaaaagaacggggttgggtttaggaaaagaagaacggggaaagcaaacatgaCTCCCGGGAAATGAGCCCTGGTCTCTGGGGAACGCCAGACAACAACTGACGGTTGTTAAGGCAGaggcggagtggcaatcgggaaAGTCTGGACGGACTAACCTGCCGCctgcccgcggacggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638903.1 lncRNA upstream 405476 23868371 ~ 23870584 (+) True LOC120556870
TU55573 lncRNA upstream 423931 23848392 ~ 23852129 (+) False znfx1
TU55574 lncRNA upstream 428122 23846793 ~ 23847938 (+) True G41308
TU55551 lncRNA upstream 439157 23836698 ~ 23836903 (+) True G41291
TU55482 lncRNA upstream 907709 23367385 ~ 23368351 (+) True G41231
TU55624 lncRNA downstream 142291 24419201 ~ 24421883 (+) True G41354
TU55631 lncRNA downstream 159472 24436382 ~ 24437700 (+) False G41360
TU55632 lncRNA downstream 159472 24436382 ~ 24451569 (+) True G41360
TU55633 lncRNA downstream 159472 24436382 ~ 24437700 (+) False G41360
XR_005639015.1 lncRNA downstream 175711 24452621 ~ 24454019 (+) True LOC120557758
XM_039798916.1 mRNA upstream 110241 23972393 ~ 24165819 (+) True LOC120558070
XM_039798919.1 mRNA upstream 110241 23987416 ~ 24165819 (+) False LOC120558070
XM_039798918.1 mRNA upstream 110241 24012529 ~ 24165819 (+) False LOC120558070
XM_039798920.1 mRNA upstream 110241 24024222 ~ 24165819 (+) False LOC120558070
XM_039797087.1 mRNA upstream 408548 23848047 ~ 23867512 (+) True znfx1
XM_039798350.1 mRNA downstream 164402 24441312 ~ 24449369 (+) True gcnt7
XM_039796931.1 mRNA downstream 213949 24490859 ~ 24521308 (+) True eya2
XM_039796930.1 mRNA downstream 213949 24490859 ~ 24521308 (+) False eya2
XM_039796508.1 mRNA downstream 281641 24558551 ~ 24560002 (+) False bloc1s1
XM_039799125.1 mRNA downstream 284795 24561705 ~ 24567422 (+) True rdh5
TU55524 other upstream 515109 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other upstream 515109 23757758 ~ 23760951 (+) False cbfa2t2
XR_005638988.1 other upstream 2284261 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 4127370 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 4352511 19917889 ~ 19923549 (+) False abhd14b
TU56251 other downstream 1991692 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 2265597 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 2265597 26542507 ~ 26548799 (+) False G41850
XR_005639013.1 other downstream 2376350 26653260 ~ 26698571 (+) False anks1ab
TU57106 other downstream 4963503 29240413 ~ 29242253 (+) True G42449

Expression Profile