RNA id: TU55632


Basic Information

Item Value
RNA id TU55632
length 1469
lncRNA type sense_over
GC content 0.40
exon number 6
gene id G41360
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24436382 ~ 24451569 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGATTGAATAGAAATTTATTTTGGCTTTTgcttgaaagaaaaagaaatgactTGAATTGCAAATATGAAGGACATATTTTTAAATCGCCCAGTGTGTGGAAAATATGATAATTCAAATTTACTACATTAGGCTATGCAGACAGTTGGAAGCACTTTGGAAAATATTGAAGCTTGTGATGCTCAGAAATGAGGAAGATCACTGAGCTAAAAGTATGTTTCCTCTATGTCCTGttacaaaattttttttttttttttttttttttttttgtattattttttatgaGTATCCGAAGCTTCACTAAATAAGATGTTTTAAACTGTCTGTTAACCATTTTTAAACCCACTTttcaagacaaaaaaataacccATGAAATTATTACAAATCACTTGAATGTCCTCTGCTAAACACGTTAAATacattatacaataaagaaATGTGGGCCAAGCTCATACTGATAGAGATaataagggtgtgtgtgtgtgtgtgtgtgtgtcaatgatcggttttcattcattaaaaataattaCTGACCACACTTTATAGATGTAGATCTTttgcgaaaaaaaaaagagtgaaatcaaCCCTATATTTGGTCTGACACTACTTTTCCAACCATGTATAGATCACTTTGAAAAGCTACACTGTGTCCACTAGGAGACAGCAGAGTGACAGAGATAATAAAGTCACCCGAGCATCAACTCTCAGTGCACCTGTGACTGAGAACACAGAGATGCTAGGGAATACATGTGGGAGGAAGGTTATAAAACAAAGAGTCTGAACAGCTTGGGGAGCCATTAACAAAATgttcacaacatgtaaacactgAGCTACAGGGGACTGAAGAGACGTATTGGGAGTCCACACATTGGTGACATAATTAAAGGTCATGTAGGCAATGTGTGTGCGTCTATATGTGTGTTGGAGCTGGGTATGTAGAACTAGGTTTTATCAGTAATGGGTCTTTAATGGGTCACAATTTCTGGAGCAATCTAAAAATGGTGTTATTTGCTCTGAGTGACAGTTACTAGAAGTGATACGGGGTGTGGGTGACCCAGTTGGATGTCtgatctttagtgcgcttggCAGAGCTGTGGCTGGTGAACAGGGATTTGAAGACCTCCGACTTCTCTGTCATTTCCTGGACGGACCTTTTGGTGGCGGAGGAAGTTGAAGACTTTGTGCCTTTAGAGGAGCTGGAGGATCCGGCCACAGCTGACTGGCTGCTTTCACCACCATTTTGTAGCGAGATCTCAGTTACATCCACTTGTGGAGCTTGTGTGTCATCTTTTGATTCTGATGGTGTGGACACAGCTTCAGCTGCTTTGCTCTTCTTTGATTTcTTAGTTTTGGCTTTGGTCCGCCTCTCTTCCATCTTCTCCCTCAGCTTCTCAACCTCCTCCTTAGTGCCATTGAGCACAACGACATCCTCATTTTTAAAGGCGTCCCCacaCTTGTGGCAGATATCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55624 lncRNA upstream 14499 24419201 ~ 24421883 (+) True G41354
TU55615 lncRNA upstream 159472 24276060 ~ 24276910 (+) True G41346
XR_005638903.1 lncRNA upstream 565798 23868371 ~ 23870584 (+) True LOC120556870
TU55573 lncRNA upstream 584253 23848392 ~ 23852129 (+) False znfx1
TU55574 lncRNA upstream 588444 23846793 ~ 23847938 (+) True G41308
XR_005639015.1 lncRNA downstream 1052 24452621 ~ 24454019 (+) True LOC120557758
TU55644 lncRNA downstream 70030 24521599 ~ 24523607 (+) True G41368
TU55653 lncRNA downstream 89340 24540909 ~ 24542153 (+) True G41375
TU55651 lncRNA downstream 103956 24555525 ~ 24560318 (+) False bloc1s1
TU55650 lncRNA downstream 106091 24557660 ~ 24560318 (+) True bloc1s1
XM_039798916.1 mRNA upstream 270563 23972393 ~ 24165819 (+) True LOC120558070
XM_039798919.1 mRNA upstream 270563 23987416 ~ 24165819 (+) False LOC120558070
XM_039798918.1 mRNA upstream 270563 24012529 ~ 24165819 (+) False LOC120558070
XM_039798920.1 mRNA upstream 270563 24024222 ~ 24165819 (+) False LOC120558070
XM_039797088.1 mRNA upstream 569451 23848047 ~ 23866931 (+) False znfx1
XM_039796931.1 mRNA downstream 39290 24490859 ~ 24521308 (+) True eya2
XM_039796930.1 mRNA downstream 39290 24490859 ~ 24521308 (+) False eya2
XM_039796508.1 mRNA downstream 106982 24558551 ~ 24560002 (+) False bloc1s1
XM_039799125.1 mRNA downstream 110136 24561705 ~ 24567422 (+) True rdh5
XM_039798771.1 mRNA downstream 116922 24568491 ~ 24583147 (+) True gls2b
TU55524 other upstream 675431 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other upstream 675431 23757758 ~ 23760951 (+) False cbfa2t2
XR_005638988.1 other upstream 2444583 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 4287692 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 4512833 19917889 ~ 19923549 (+) False abhd14b
TU56251 other downstream 1817033 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 2090938 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 2090938 26542507 ~ 26548799 (+) False G41850
XR_005639013.1 other downstream 2201691 26653260 ~ 26698571 (+) False anks1ab
TU57106 other downstream 4788844 29240413 ~ 29242253 (+) True G42449

Expression Profile