RNA id: TU55653


Basic Information

Item Value
RNA id TU55653
length 239
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G41375
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24540909 ~ 24542153 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctggacagcctccaCTCTGCCACCAACCTGATGTATTCCTCTTTATTTTCCTCAGTTACTTGGATGTTCCCTCCATCTGGTTTCAGCTCGTGGGTGGTGACCTCCCCCAGGATCTCCTTGTCAACGGAGAAGAACATCTCCAGACCACACTCCTCTATATTATTATCCTTGATCCAGATGAGTGAGTTGTAAAACTCCGGATCGATGGACTCCAGGTCTTTGAGAGCCAGAGGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55644 lncRNA upstream 17302 24521599 ~ 24523607 (+) True G41368
XR_005639015.1 lncRNA upstream 86890 24452621 ~ 24454019 (+) True LOC120557758
TU55632 lncRNA upstream 89340 24436382 ~ 24451569 (+) True G41360
TU55631 lncRNA upstream 103209 24436382 ~ 24437700 (+) False G41360
TU55633 lncRNA upstream 103209 24436382 ~ 24437700 (+) False G41360
TU55651 lncRNA downstream 13372 24555525 ~ 24560318 (+) False bloc1s1
TU55650 lncRNA downstream 15507 24557660 ~ 24560318 (+) True bloc1s1
TU55739 lncRNA downstream 379483 24921636 ~ 24921851 (+) True G41441
TU55833 lncRNA downstream 480305 25022458 ~ 25022749 (+) True G41518
XR_005639034.1 lncRNA downstream 510683 25052836 ~ 25065136 (+) True LOC120557911
XM_039796931.1 mRNA upstream 19601 24490859 ~ 24521308 (+) True eya2
XM_039796930.1 mRNA upstream 19601 24490859 ~ 24521308 (+) False eya2
XM_039798350.1 mRNA upstream 91540 24441312 ~ 24449369 (+) True gcnt7
XM_039798918.1 mRNA upstream 375090 24012529 ~ 24165819 (+) False LOC120558070
XM_039796508.1 mRNA downstream 16398 24558551 ~ 24560002 (+) False bloc1s1
XM_039799125.1 mRNA downstream 19552 24561705 ~ 24567422 (+) True rdh5
XM_039798771.1 mRNA downstream 26338 24568491 ~ 24583147 (+) True gls2b
XM_039798200.1 mRNA downstream 81339 24623492 ~ 24822313 (+) False asic1b
XM_039798201.1 mRNA downstream 81492 24623645 ~ 24822313 (+) False asic1b
TU55524 other upstream 779958 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other upstream 779958 23757758 ~ 23760951 (+) False cbfa2t2
XR_005638988.1 other upstream 2549110 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 4392219 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 4617360 19917889 ~ 19923549 (+) False abhd14b
TU56251 other downstream 1726449 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 2000354 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 2000354 26542507 ~ 26548799 (+) False G41850
XR_005639013.1 other downstream 2111107 26653260 ~ 26698571 (+) False anks1ab
TU57106 other downstream 4698260 29240413 ~ 29242253 (+) True G42449

Expression Profile