RNA id: XM_039798937.1


Basic Information

Item Value
RNA id XM_039798937.1
length 3938
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC120558082
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 25767092 ~ 25872919 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctgtttgtgtgtgcgtgcgcatgtgTCTGTTTGCGAGTGTGTGTGGGTACCTCTGGCATCTCTGGTTTCGCATAGGGTGTTAAATTACCCAATGGGTGCTTTAATAGAGCTAGAGACACTCTTGATTGTGAGTCTGGATGAGGGAGCGATTGAAGGGAGGAAGGGGGAGCAGAGCGGAGCTGCCAGGCAGGATTGAGAAGGCAACACAACTTCTGCAGAGCCGGGGACGCCGATTACACAGAGGACTGAATCCAAACATAGCGTACGGCTGCCTGGATGAGAACCAGAAGGAGGCAGGCCCTGCCAGGATCTACAGCGTGGCACTGGTTGTGGTATCCCCTCTGTCTCCTGCGCTCGAACCAGGCTGATAGACGGAGCTGTGGCCTGTGACGACAGGCGATGGAGGTGCCGCTGGTTAATTTTGAGAACATGGATGATGTTGGCATCAACCTGGGGGACCCGAGTGACTCTGGGTACCCGACTTCACCCCCGtcagaggcccatgatcacaaTCTTTTAACCCACCGCCTTAGTTCTCCTCACCAGTCGCCACACAGAGGACGACGTCGGCATCAGTCTGGTCAAGAAGGGTTGTCACCATCCACTCCTCCGTCATCTCTGACCACTAAAGCAAAGTCAAGCAGTGGCAGTTTGATCTCTAATGTGAAGCTCCTGATCAACAGTGAGTCTCCCACTGACAGCGTCTTCAGTAAGATGGCAAAGGACTGCTACGAGAATGAAGATGTGTTTGAAAAGCACTGCATTGAAGAAAAAGACGAGAAAGTTGTCATCAATATTTCAGGCCTGATGTTTGAGACCCAGCTCAGCACCCTGAATAACTTTCCAGAGACGCTGCTCGGTGACCCCATGAAGAGGATAAGATACTTCGACCCAATGAAAAACGAGTACTTCTTTGACAGAAACCGCCCGTCTTTTGATGGTGTTCTGTACTTCTATCAGTCAGGGGGGAGAATCCGTAGACCGGCCAATGTTCCCTTAGATGTTTTTGCGAATGAAATGGTTTTCTATGAGTTGGGTCATGAAGCGATGGAGCAGTTCCGCGAAGATGAAGGGTTTATCAAAGAGCCAGAGGTCCTTCTGCCCACCAACGAACTCAAACGACAATTCTGGCTACTGTTTGAATACCCAGAAAGCTCCAGTGCAGCCAAATCTGTCGCTCTGGTTTCTGTGTTTGTCATCGTCATTTCCATTGTCATCTTCTGCCTAGAGACTCTGCCAGAGTTCAGGGAAGACACTGACTTTCCCCCGATTTTAACCCAACTCATCAACGGGACCCAAGGCGGTTCTGCCCCTCATCCCGCCACTAAAGACGTGTTTGCATATTTAACAGACCCCTTTTTCATTGTGGAGACTATTTGCATCATTTGGTTCTGCTTTGAAGTTGGTGTCCGTTTTGTGGTGTGCCCCAGCAAAAGGGATTTCTTCAATAACATCATGAACACCATTGACATAGTCTCTATAATTCCCTACTTTGTAACCCTTGGAACAGAGCTGGCTACGACCCCTGATGATGATATGAACTCCAGTCAGAACATGTCCCTGGCGATCCTAAGAATTATCCGTCTAGTGAGAGTTTTTAGAATTTTTAAGCTCTCCCGACACTCGAAAGGGCTTCAGATCTTGGGGCAGACGTTGAAAGCCAGCATGAGGGAACTCGGGCTGCTTATCTTCTTCCTTTTTATAGGAGTCATCCTATTCTCAAGTGCCATCTACTTTGCAGAAGTGGATGAGCCCCAGACGCAGTTTGTCAGCATCCCTGACGGCTTCTGGTGGGCTGTGGTGACAATGACCACTGTGGGATACGGAGACATGTGCCCCATCACAATCGGAGGCAAAATGGTCGGCACCCTCTGTGCCATTGCTGGTGTCCTGACCATTGCCCTGCCCGTCCCTGTCATCGTCTCCAACTTTAACTATTTTTACCACCGTGAGACTGAGCAGGAGGAGAAACAGGTGATGGATGCGGCGGCAGAGGCTGCTCAGAAAACGTCAGCTGCAAACAAGTACGGAAGCACACCCTCGCTAAACAAAAGTAACGGCAACtggcaaaatgagaaaaatggCGCACACTGTTAGAGAAAGTACGAGATGCACTGCTGCGATATTAGTTTGTTTCTCACTATTTTGTACTCCAAACATGGGAACATGTTTGCATATTATGACAGTATTATTAGGCCCTGTGTGGTGAGGCAGCCTTTATACAAGTTGTCTGTCTGCTTGTGGATGTGTCAAAGTGCAATTAACACAACTCAGCAACTACTCTGTCCGTTCAACTTCAATGAGAAGAACTGAAAGGTATAATTATCATCTTTCATCCAGTGCAATTTGAAGAAAAATGTTATGGCTCATTTGTACTATGGACATTTCTTCACCTTGAAAATGTTGACTGTTGGGATAAACAAGTGCAAAGGCAAAGTAAGTTGTAAGTTTCACCAAAATGTCCTTGAGGGTCTGAATAACAGTAAGTTTAtcccacaaaagaaaaaaaactgttgtgaTAGAGATCAGAGCATTTAAACTGGAAGTATACTCAGAGTTCATATTACATCAGTTAGTCTACACTTTGTCATAATCAGcaaaaccaaaatagaacttgTCACGATTTTCAAGGGCAGGCGAATAGTGTAAGGCAAGAGGGCACACATTGTCTTATCAGCAAATCTATAGATGTGAATGCTCAGCCAGCAGACCTTCTCCATATGAGCAGCATAACATAACAATATTTGTGTGATATGCCACTTTTCCACGGCAGGAACATTCCCCAGGGTCTACAGTAGGAACATTTTGAGGAACTCATTGCATTTTGACCGCAGGGACCAGGGTCTAAATTAAGTTCTGGGGCCTTTTTACACCCTAAAATGTTCCTGAATAAATTAAATAGTTGGCATGTCTGCTATTAGTCTTGTAGATAGGCAAAATATAAATCTGCAGTATAGTACATGCAGTAGTTGCATgcagcttttaaaataaaaagtaatttttaactacatggtttcatttttacTATTTGGCGTTTTGCACAAGATCTAATATTGTTATTATAACGTGAATTTATGCTTTAAAAACCATATCAATTTGTAGCACTGTTAGTTTATTCCCACATATCTCTTGAGCACTTTTGGAGCTTTACACCATCAGCTGTTGGCAGGGAAAACACATTTCTTAGAGTGTCTAATGTAAATGTGAGATGAGGTATATATTTGTGATCAGACTGAGAGAATCGAGGAGAGGGCATAGACAAAAAACAATAACTTTGCACTCTTGTATTTGAAAATGCCTCTATTTACCCTTGTTCTCTCATTTGTATTGCATGGCATAGTGTGCCGAAATGAGTTTTAACTCTTATTATCAGTAACTGAAAGTTTGACATATTTATTGTACCTAAATATATTAGTCTTTCAATCATATAGTGATTATCATTATATTCAATGTGAAGGGAGAGCCAATACTACAACTGGATTTGTGAAATGATGACAACAAATGATGAATTGTGTATCTCATCGGGAAATTGGTACTATATATGCATGCCACGTTTCAATCTTgagaatgtactgtatgtgagttTAGTATACATATAAATACAGCTTGTATAGAAATGGCAGTGGATGTAGTTGTAACACAATCAATGCCTTTCTAATAATCCCACAATATACAATAATGATGACATGTGGGTGGCAAAAACAAATATGTTGTGTTTTTCACCCAATGGAAAGAGCAAtactttaattaattaaaattaaatgcaATAAGGTGACATCAGTTAGTCACGTCAGCACTTTACTATGTTATGAAGCACTTAATACTTGAGGACTGTTACTGTACGGTATGTGTCAACATTGTACAGTATACAGTGTcgtaatgttttatttatccTGTAAAGAGTGCCTTTCATTAAACATGTATCCTAACTGTGTA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55973 lncRNA upstream 182005 25682467 ~ 25685984 (+) False slc16a1a
TU55969 lncRNA upstream 321149 25546509 ~ 25546840 (+) True G41630
TU55968 lncRNA upstream 321689 25545917 ~ 25546300 (+) True G41629
XR_005639060.1 lncRNA upstream 367018 25499083 ~ 25500971 (+) True LOC120558141
TU55900 lncRNA upstream 553730 25313719 ~ 25314259 (+) True G41570
TU56058 lncRNA downstream 12303 25885222 ~ 25887733 (+) True G41694
TU56061 lncRNA downstream 33383 25906302 ~ 25907633 (+) False LOC120558088
XR_005638956.1 lncRNA downstream 48835 25921754 ~ 25923063 (+) True LOC120557323
TU56139 lncRNA downstream 128562 26001481 ~ 26002751 (+) True G41746
TU56162 lncRNA downstream 153636 26026555 ~ 26027210 (+) True G41754
XM_039798939.1 mRNA upstream 15829 25844464 ~ 25852160 (+) True LOC120558084
XM_039798938.1 mRNA upstream 36079 25830111 ~ 25831910 (+) True LOC120558083
XM_039797469.1 mRNA upstream 139607 25722791 ~ 25728382 (+) False slc25a55a
XM_039797470.1 mRNA upstream 139607 25724378 ~ 25728382 (+) True slc25a55a
XM_039797472.1 mRNA upstream 148989 25717205 ~ 25719000 (+) True tshba
XM_039798943.1 mRNA downstream 6037 25878956 ~ 25883081 (+) False LOC120558086
XM_039798944.1 mRNA downstream 6038 25878957 ~ 25883081 (+) True LOC120558086
XM_039798946.1 mRNA downstream 31850 25904769 ~ 25907738 (+) True LOC120558088
XM_039797531.1 mRNA downstream 50288 25923207 ~ 25935275 (+) True LOC120557320
XM_039797534.1 mRNA downstream 65392 25938311 ~ 25972929 (+) False tead3b
TU55524 other upstream 2107038 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other upstream 2107038 23757758 ~ 23760951 (+) False cbfa2t2
XR_005638988.1 other upstream 3876190 21950376 ~ 21991799 (+) False itga7
TU54259 other upstream 5719299 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 5944440 19917889 ~ 19923549 (+) False abhd14b
TU56251 other downstream 395683 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 669588 26542507 ~ 26548799 (+) False G41850
TU56293 other downstream 669588 26542507 ~ 26548799 (+) False G41850
XR_005639013.1 other downstream 780341 26653260 ~ 26698571 (+) False anks1ab
TU57106 other downstream 3367494 29240413 ~ 29242253 (+) True G42449

Expression Profile