RNA id: XR_005639013.1


Basic Information

Item Value
RNA id XR_005639013.1
length 4299
RNA type transcript
GC content 0.49
exon number 15
gene id anks1ab
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 26652851 ~ 26764737 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCAAACAGGAGCACTTTGTATGAGTTAAAGTCAGATTACTCAAGTATACGATACTTATATAGTTTATTAATCTGTGTCTTTCAGTACTACAATTGACTGGCTTTCTAGAAGTTTAAAAGCTCCACAAAGATCTTGGATCACTCTCTTGGACTGACTAAACAAGTCAGAATACTGCAGGAAACTGTGGACCCTGAGCTGCACTTGGCAGCTCCAAAACAATGGCAGAGTGCACGCAGGATGCCAACCCCGCCAACGTGATCCAGAATCCAAAAGCTGACATTAAGGATTCGAGAGAAGTGTCAGCTGATGCTGCATCGGTGGTAGCGCTCAAAGTCAGACCTGCAGACCTGGGATTGATTCGAAGTTTGTCCAAGTCGGACTCTGACTTGTTGGCGTCACCACTCGGAGAGGAGGATGGCGGTCTGTCTGGCCGCAGTGGGTCCGTGTCTAACTGCAGCTCTGGGCGGCCGTCCACGGAGCACATGCCTTCCTTTGCCTCTGAGTGGGATGAGATTGAGAAGATGATGAATTTGATTGGAGCAGGCATTGAAACGTCCCAAAAGAAACAGCCCACGGCAAGTTCAGATGGGGCCTGTGGTAAAGCCCTGGACCAGCCGGTCGGAGAGTGGCTGGAGCACGTGGGGCTGCCGCAGTACGAGAGCAAGTTCCTGCTCAATGGCTTCGACGACCTACGATTCATGGGAAGTAACGTGATGGAGGACCAGGATCTCAGGGACATTGGGATCACTGACCCAGGACACAGAAAGAAAATACTCCATGCGGCACGCAGCTTGCCCAAGGTGAAAGCACTGGGCTGTGATGGCAGCACATCGCTTGTCTCCTGGCTGGACAGCCTCGGCCTGCATGAATATCTGCCCAACTTTCTTTCAAGTGGCTACCGCACACTGGACTGTGTAAAGAACCTGTGGGAGCTGGAGATTGTCAATGTGATTAAGATTGGTGCCCTGGGCCACAGGAAGAGGATCATTGCCTCTATAGCAGAGAGACCCTACGAAGAGGCTCCGACCAAATCCCGTCGTCTGTCCCCAATTATGttccATGACCTCCTGTCCCAGACCACATCCCCCCTCAGTCAGATGGACCCCTACACCAGTCGCTCCATGGACATGCTCCTGCCCTTGACTGAGCCGGACCGGAGGCGGAGAGGAGTTGACCAAGACTGTAGTGTTTCTCTGCGTTCATATAGTGAAAGGCCGCGCTCTGTAGACAGACAGAGTGAACGACACAAAGACTCTCGGTTAAACCTCCGCCCGCCGAACCAGTCTGCTACCTACGCCACGGTGTCCACCTGGCATCACCAGCCTGAGAAGCTCATCCTGGACTCCTGCGGGTACGAGGCAACCTACCTAGGATCAATGATAATCAGGGATCTACGAGGGATTGAGTCCACACAAGATGCCTGTGCAAAAATTAGGAAATCAAAGGATTCAAGAAAGGGTCCAGTTGTCATACTGTCCATTACCTATAGAGGGGTCAAGTTCATCGATGCAGCCACAAAGACTATAGTTGCAGAGCATGAGATCAGAAACATCTCGTGCGCCGCCCAAGACCCAGATGACCTCTTCACTTTTGCTTACATTACCAAGGATCTAAAGAGCGGCCATCACTTCtgtcatgtcttcagctgtatGGAAGTGacacagacctaCGAGATCATCCTAACACTGGGACAGGCGTTTGAAGTGGCCTATCAGATGGCAATGCAGTCCAGGGCAAGACACTATGTCCCACCGACATCTCTGTCCTCAGAGGTCATAGAGACCAAAACCAGCCGCCCTGTATCTCAGTCGTGGAGCAGCATGCGAAGATCAGCAGGTGCCCCTCTGCTCGAATGCCGCTGCTGTCACTGTCACACGTGTACTTCCCAccgtccttccttcctcccGTTGCACTCTGTTAGCCCTGGAGTCCAGATCGACCCCCTGGAGATGGACGCAGACATGCAGTCCCTGGGCAGCACCACCTGGCTCTTGGACCAGCGGGACTCCCACAGGCGCCCTGTCAGCACCAAGTACGAGACCACCATATTCTGAGGCCGGATCCCCACAGCCGCCCTCTGCACCCCGTACTGTCCTCCCCCCTCCCGCCCGCCCCCCTCCCTCCTGCATCCGGTTCTTTATTtacctcacacagacacacacacacacacgcacacgcacacacaagccCCGTGCCTTCTCACTGTGATGGTATAGCATCCCTCAGGGCTGCCTACTCCTGCACCTTCCTTTGCCCTGCCCAGCGACCCACACCAACCTCTTTACCCGCCATGACAAACACTCCTGCGGCTGTCCCGTGCCTCCCCAACATCCCTGGCAGCCTCCCTCGTCTGTTGCTGCAGCCAGTGGCGGAGCCCTGGAACGGATGATCCTGGACTGATCTCATTTTACGGTGGCCCTGCTCTCTCAACCAAActgcctcttcctcctcatcctcctcctcctgacaACTTGCATCTGCCTTCAAATCCCCGATAGCTCCTAGAGCCTGTCCTGTCTTACCAGGCATCTACCACTGTGAGGCACTATGAGGAGGCTGCTTTGCTAGCATGGGATGCAAGACGggcaattaaataaatgaaagacaAAACAGCAACATGCAGCAAACAACCAGTTTTTTTTCTACGCATTTGTACAATACTCATAACAACACGATAGATTGGTCGTGAATCTATCACTGATGTCTGAACTCAAACGGACCAAGAACTGAAACCTcgtacacacaacacacaggagGACAACTTTCCTACACCTTACCGAGGACAACAGCCTTACGTCATTTCGGTTATCTATAATCAACTAAAGCCCCCACCTCCCCCCGACATCCCTGaattccaccaccaccacccaacAACTGCACGCCTCCCCACTGCTTCTAAAAGACTAAAAAAAGACAACCCATTTGATTTCCTGGTGTGTTCAGTTGACCGTGACTGGCTGGGATGAGGTTGTTCTTATGATGGTACAGAGAGTCTTTGCTCTGGCCTTTGTACTGCCCTTTCTGCAGTCTCACAGCATCTATGGTAGCACAGAGACACTGCAAATCACAGCATCTTCTTgtcaattaaaatatatatataataacactGTGTTTAAACGTGGCACTATCCCTTTTAATACCTTCTTTTCTTACAGTGCAAATAGACAGGGCAATTTGTGATACTTTTTGATAGATGGGGGCTTGATTGAAAATACTTGATTTAATGAGTGATTCAAGAAGGGATCATAAAGGATCCCAACATTAATACAAccagaggcaaaaaaaaacaaaaaactaactaaACAAATACCACCCAAAAACATTGCACAAGCATATTGAGCGTACTGACATTGGATCCACTTTTCACAATTTAGGTAATCTAAACAAAAACATCCTCAACGAGATTTCATTTGACTCGTATATGAATGAGTTTGGAGCACATTTCCCAACATAGCATCTTATTATCATGATTACATGGGTAGGTATCTATGCTGTTTCACACCAATTTAGAATTAGGTACAGTCCATGCAAAGTATGTCACTTGAAAATAAACGGCAGTGAAAAGATTTTATTCCACTTACATTGAAAAAGAGCCAAATCTTAAAGTGTTGCTCTGGTGTCGCGTTAATGCGAAAGGATTTGTTATGCTGAGAACATGACagttaatttattattatttttttttttataagaattTCCCTCCTGCACTGTGACTCAAAAATGCTCGTTGTGGAGTCGACACATATCCGTGGGTCCTCCCCTGTGTGCGCTACCTACTGTGCGTGCTGTATGCTTTTCTTGTGTCTGCCCTCATGGGAGTTTGGACCGTTGCTGTTACATCACTGTCCACTGTCCTTGTTTCTATGTGCTGCAGGAGAAGTGAGGTATTAGAGCTCCTCTCCAGAAGACAGTGTGTCTGGAGACTGACAGTTAACGCTGTAACTGGTTGGCGTGCGGTACAGTGGCTGTGTCATTGCCACTCTTGTTATGACTGTCAACTGTTAGCTTCCACTGACGATGCATGTTggcagtgtttttttgtgttcttgTACCCTTTGATGCACTTGGCCTGAGCAGTCTCTGTATGTACTGTAGCAGTGTCTCGTCTCTTCTCACTCATCTGCCATTTGCTTTTTATGTTCCCTTTCTCTCTTCGTTACACACCAAATACAGCGACTCATCCTCATCTCTCCACGTTTCCATTGTCGTCATTCCTCCCAACAATTTGTCACGTATGTTCTTCCATTTTGTGTGTCACCAAGACAACCTGCTCTAGTATGGAtgcataatataaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56295 lncRNA upstream 108161 26542507 ~ 26545099 (+) True G41850
TU56281 lncRNA upstream 248358 26400453 ~ 26404902 (+) True LOC120557964
XR_005639038.1 lncRNA upstream 249036 26400453 ~ 26404224 (+) False LOC120557964
TU56272 lncRNA upstream 307801 26344137 ~ 26345459 (+) True G41835
TU56271 lncRNA upstream 315056 26324805 ~ 26338204 (+) True G41834
TU56337 lncRNA downstream 8698 26707269 ~ 26709577 (+) True G41865
TU56412 lncRNA downstream 239906 26938477 ~ 26938745 (+) True G41927
XR_005639067.1 lncRNA downstream 495601 27194172 ~ 27209333 (+) True LOC120558213
XR_005639068.1 lncRNA downstream 495601 27194172 ~ 27209333 (+) False LOC120558213
TU56528 lncRNA downstream 526712 27225283 ~ 27227610 (+) True G42020
XM_039796324.1 mRNA upstream 19608 26630429 ~ 26633652 (+) True snrpc
XM_039797964.1 mRNA upstream 67667 26550817 ~ 26585593 (+) True pacsin1b
XM_039797967.1 mRNA upstream 71449 26561782 ~ 26581811 (+) False pacsin1b
XM_039797968.1 mRNA upstream 71449 26561853 ~ 26581811 (+) False pacsin1b
XM_039797966.1 mRNA upstream 71449 26567558 ~ 26581811 (+) False pacsin1b
XM_039797746.1 mRNA downstream 91913 26790484 ~ 26815402 (+) True slc2a1b
XM_039797546.1 mRNA downstream 147279 26845850 ~ 26962727 (+) True si:dkey-166d12.2
XM_039797544.1 mRNA downstream 168990 26867561 ~ 26962727 (+) False si:dkey-166d12.2
XM_039797542.1 mRNA downstream 215223 26913794 ~ 26962727 (+) False si:dkey-166d12.2
XM_039797541.1 mRNA downstream 217471 26916042 ~ 26962727 (+) False si:dkey-166d12.2
TU56292 other upstream 104461 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 104461 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 379945 26268602 ~ 26273315 (+) True G41825
TU55524 other upstream 2892309 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other upstream 2892309 23757758 ~ 23760951 (+) False cbfa2t2
TU57106 other downstream 2541842 29240413 ~ 29242253 (+) True G42449
TU57834 other downstream 5761561 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 5772224 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 6339363 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 6489167 33187738 ~ 33212318 (+) True G43277

Expression Profile