RNA id: TU56528


Basic Information

Item Value
RNA id TU56528
length 2294
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G42020
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 27225283 ~ 27227610 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAATTTTCATCAGCTGCGCATTTAATGTATAACAACAGTACAAAGTGAATCTTTTTTGCTTGCAAAATAGGAGTGTTTTGTATGTACAATAtttatacaataatatatagtttaaaaaacatgACAGTTTAAACGTCTGACAGTTTATTGCACAACACATTTATAAATTATCATCATCAAACCACACATGAAACAGATGAGTTCTCTGTCATATTTCAACACTTAACgggaaatgtattatttatattgttttatcTTGCTCTTCTAGATTAGCATGAATAAAGGTCCTGTGGGGAGTACATTAACCCCACTGATACTGAAATGGTAAGAAGAGCAGCGCTCTGAAATGACACTGATAGACAGTCGCTGTGACTTTCATACGGAGCGATGAAACTGCCTCAAGCACAGAAAGAAGTTCATCTTTCTTTCAGCATTGCAATGGGTAaaatacaaaactaaaacccTGAATTCACATGATGCCTCAGAcgtactttttcatcatgaaaatcattttaaagtttAGATATGGCACTCTATAAATACAGCAGCAAGGAGACAACAAGCGGTCAGGTAAAATGTACATATCAATGCAAAATTAAAACTTGTGAATTATATGCTGAAAGAACAGTCCGGACTTAAAGCGAAGATAGCGCTGTGAAGCAACAAACAGACATTTAATGAATGAACTTTACAAGGACCAAGAACTGATCCAAACCCATGTATCATTAATCATATATCCACTCTGTGGACAAAATATTAGGAACACATACTTTATTCTGAGCTACAGACCCGCTTGCAGCACCCACAGCTCAAATGTCTCCAGGGTGAAAAATCCTTCCGGCTCGTTTCCTACGTTTCATTTCCAGGTTACGTTTTAAAGTGGATTTATTGGGGAAAATCATTAAGGCATCAAAGCCTTCATCTAACTAAATCTGGCCAGATTACTTCACAAGTGCAGCAGGCGTTCTTAATATCTTGTACACGCAGTGCATTTCAAGTATCACGCTGGATGTAAACAATGACTGATGAGACAGGGAGGGTGGAGGAGCGGCGCTGTTGGCCAGGGTTTGGGTAATCTGATTCACGATCAGACTTAAAGCATCATTAATCATGCTTCCTGCTACAGTTCAATTTGGTCTCCACTTATCTTTGAATGGCTGAATTGGTGGTCTATAGATCATCACTGTACAACATTTCCTATCTTAAATGGGATCTTTTCCGTACAATGACATGTATTTTTAATAGCTTCTACAGGAGCGTTTAACATGAATTAAACATGAGACATATTATATTTGGCACAAAAAGCCAGGAATTAGATCTGGAAATATCTCTACATATATTTCAAATTTGCAGTATTATTAAAGAGCTGAACCTTCACCTCGTCAATACCAAATTTTGTGTATACTGTTCAATCCCTGGCAGACGTGTAATTCAGAAATGACTGGGAGCTTCAAGTggggaaataaaaaatgtaatgatgccggtgtgtttagtgttgtcttttttaagCCTTCAAAAGGCAGTAGGAAAACACTGCTCCAAATGGTGATATCAATCCAAACCTGTGATATGTAGTGTGAATAAGTGTCCTTCATCTTTGACATATAAAAAGTACTTTATCTTGTCTCATCACGTGCCATTCCAATGAAATAGCTCCTGTCTTTGTTGAGCTTCTCCAGTGACTTTTCAAGTTGAGTCATTCTTTATTAAGTGTTGTTCTCTTCAGAGCTCCAgccatgccacacacacacattttgtatAAGCCACTACAAAGACAAACCATTACCGCATGGGAAAGAATTGGCTGCAAATTCAGCATCCGTGATGGCCCaaatcctctctctgtctctctctatagGAGCGTTTTAGAAATTGAGTGTTTGCCTTTGTAGTTTCTTCTGAAAAACCGATGACATTGGATTCAGTTCGTGCTTTGGGATGAtctgtgtgctgtggtttatgtATGTACATTTGTATGTGTGCATTTATGCGTGTGTGTAAATGTCTTTGTATGTATTGTCAGTTTGTTTATACAGTAGGTCCATTAAGTCTGCAatttcggtgtgtgtgtgtgtgtgtgcgcacatcTGAGTGCCACGTGTGTTGCCGATGGGTTTATAACTCTTCTGTTATAGTATGtttcagtgtgtttgtttgtagtgtgtgtgtctgtgtgtatgtatgtatttgtgtatgtgtctcagCTCTCTATAGACATGGCTGAGATGATCTGCTCCACTTTATACGCCAACTTCTGCTTCTGGGCCTGTTCATCCTGCTCCAGTGCCTCGATg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639067.1 lncRNA upstream 15950 27194172 ~ 27209333 (+) True LOC120558213
XR_005639068.1 lncRNA upstream 15950 27194172 ~ 27209333 (+) False LOC120558213
TU56412 lncRNA upstream 286538 26938477 ~ 26938745 (+) True G41927
TU56331 lncRNA upstream 460546 26695632 ~ 26764737 (+) False anks1ab
TU56337 lncRNA upstream 515706 26707269 ~ 26709577 (+) True G41865
TU56541 lncRNA downstream 114989 27342599 ~ 27342850 (+) True G42031
TU56575 lncRNA downstream 192177 27419787 ~ 27432384 (+) True G42061
TU56592 lncRNA downstream 212870 27440480 ~ 27442339 (+) True G42074
TU56594 lncRNA downstream 214798 27442408 ~ 27446281 (+) True G42075
TU56605 lncRNA downstream 232911 27460521 ~ 27461759 (+) True G42085
XM_039796912.1 mRNA upstream 55576 27158737 ~ 27169707 (+) True im:7151449
XM_039796913.1 mRNA upstream 55576 27158737 ~ 27169707 (+) False im:7151449
XM_039796914.1 mRNA upstream 55576 27158737 ~ 27169707 (+) False im:7151449
XM_039796910.1 mRNA upstream 72137 27011403 ~ 27153146 (+) True LOC120556972
XM_039796911.1 mRNA upstream 74125 27011398 ~ 27151158 (+) False LOC120556972
XM_039798801.1 mRNA downstream 119385 27346995 ~ 27348100 (+) True LOC120558010
XM_039797700.1 mRNA downstream 121303 27348913 ~ 27364609 (+) True phtf1
XM_039797701.1 mRNA downstream 121304 27348914 ~ 27364609 (+) False phtf1
XM_039797702.1 mRNA downstream 137090 27364700 ~ 27378321 (+) True pfkfb2b
XM_039797703.1 mRNA downstream 137090 27364700 ~ 27378321 (+) False pfkfb2b
XR_005639013.1 other upstream 526712 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 676484 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 676484 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 951968 26268602 ~ 26273315 (+) True G41825
TU55525 other upstream 3464332 23757758 ~ 23760951 (+) False cbfa2t2
TU57106 other downstream 2012803 29240413 ~ 29242253 (+) True G42449
TU57834 other downstream 5232522 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 5243185 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 5810324 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 5960128 33187738 ~ 33212318 (+) True G43277

Expression Profile