RNA id: XM_039797738.1


Basic Information

Item Value
RNA id XM_039797738.1
length 2972
RNA type mRNA
GC content 0.54
exon number 15
gene id ephb2b
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 27670963 ~ 27823260 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATCGCTCTATTGGAGGTGAAGGACCGCCTGTCCCCCCTCTCTGCCTGTGCTGTCAATGGCTTTCGGGACATATTTTATTTGAATGCCCGGGCGATATAAGTGACCAATAATGGATATTCTATGGATATTATGGACCATACCGGCCGTAATAGCTGTTGaagAGACACTTATGGACTCCACTACAGCCACAGCGGAGCTGGGCTGGACGGTCTACCCCGTGTCAGGGTCGAGTGACAATAGCTGGGAGGAGGTGAGCGGTTATGATGAAAACATGAACACCATCCGGACGTACCAGGTCTGCAACGTTTTCGACAACAATCAGAACAACTGGGTACGGACAAAGTACATCCGGCGCCGTGGCGCTCAGCGAATCCACGTGGAGATGAAGTTCTCGGTGAGGGACTGCAGTAGCATTCCCAACGTGCCGGGCTCCTGTAAAGAGACGTTTAACCTCTATTACTATGAATCCGATGCCGACACAGCCACCAGAACCTCACCAGCTTGGATGGAGAACCCCTGGATCAAAGTTGACACCATCGCAGCGGACGAGAGCTTCTCCCAGGTGGACCTAGGGGGCAGAGTGATGAAGATCAACACTGAGGTTCGAAGCTTCGGCCCAGTGTCACGGAATGGCTTCTACCTGGCCTTCCAGGACTACGGCGGCTGTATGTCGCTCATCGCCGTACGCGTCTTTTACCGAAAGTGCCCCCGTATCATCACTAACGGGGCGTTGTTCCAGGAGACGCTCTCGGGAGCAGAGAGCACCTCCCTGGTGGCTGCAAGAGGTGTTTGCATCCCCAACGCAGAGGAGGTGGATGTGCCCATTAAGTTGTACTGCAATGGAGACGGTGAATGGATGGTACCCATCGGACGCTGTATGTGCAAGGCTGGGAACGAGGCTGTGGAGAATGGGACCGTTTGTCGAGCCTGTCCGTCTGGCTTTTTCAAGCCGACTCAAAAAGATGAGCCCTGTATGCAGTGTCCCATCAACAGCCGTACCACCAGTGAAGGCGCCATGAACTGCGTTTGCCGCAACGGATACTACCGCACCGACTCCGATCCTCTCCAGATGCCGTGCACAACTGTCCCCTCAGCTCCACAGACTGTTATCTCCAGCGTGAATGAAACCTCTGTGATGCTGGAGTGGATGCCTCCCCGGGATTCCGGGGGCCGCGAGGACGTAGTCTTCAACATCATCTGCAAGAGCTGCGGCGGAGGCCGGGGAGGCTGCACCCGCTGCGGGGACAACGTTCAGTTTTTGCCCCGTCAGCTGGGCCTGACAGAACCCCGGGTCTACATCAGTGACCTGTTGGCCCACACGCAGTACACGTTTGAGGTGCAGGCTGTCAACGGGGTGTCAGATCAGAGCCCCTACTCCCCTCAGTACGCCTCCGTCAACATTACCACTAACCAGGCTGCTCCATCTACTGTATCCATAATGCACCAGGTCAGTCGCACCGTGGACAGCATCACCCTCTCCTGGTCCCAGCCTGACCAGCCTAACGGAGTCATACTGGACTATGAGCTGCATTATTATGAAAAGgATCAATCAGAATATAACGCTACCGCCATCAGGAGCCAGACCAACACAGTGGTCATACGTGGCCTCAAACCAGGAAGCATCTACGTGTTCCAGGTCCGGGCCCGAACCGTAGCTGGCTTCGGACGTTACAGTGGCAAACTGTACTTCCAGACCATGACTGAGGAGGAGTACAACACCAGCATTCAGGAGAAGCTACCTCTCATCATCGGCTCGGCAGCTGCTGGCTTGGTCTTCCTCATTGCTGTTgtcgtcatcatcatcgtcTGTAACCGGCGTGGCTTTGACAGGCCTGATTCAGAATACACGGACAAACTGCAGCACTACACCAGCGGCCACATGACTCCAGGAATGAAGATTTATATCGATCCGTTCACATATGAGGACCCCAACGAGGCTGTGAGGGAGTTTGCCAAGGAGATTGATATATCCTGTGTGAAGATTGAGCAGGTCATTGGTGCAGGAGAGTTTGGAGAGGTGTGCAGCGGTAACCTCAGGCTCCCAGGCAAAAGGGAGATGTTTGTGGCCATAAAAACACTGAAGTCTGGCTACACTGAAAAGCAAAGGCGAGACTTCCTCAGCGAGGCCAGCATCATGGGCCAGTTCGACCACCCCAACGTCATTCACCTGGAGGGCGTGGTCACCAAGAGCAGTCCTGTCATGATCATCACTGAGTTCATGGAGAATGGGTCTCTGGACTCCTTCCTCAGACAAAACGATGGGCAGTTTACTGTGATCCAGCTGGTTGGTATGCTACGCGGCATCGCCTCAGGCATGAAATACCTGGCCGACATGAACTATGTGCACCGCGACCTCGCAGCCCGGAACATCCTGGTCAACAGCAACCTTGTGTGCAAGGTGTCGGACTTCGGCCTCTCGCGCTTCCTGGAGGATGATACATCAGACCCTACCTACACTAGTGCTCTGGGAGGGAAGATTCCTATCCGATGGACTGCACCCGAAGCTATCCAGTACAGGAAGTTCACCTCTGCCAGTGATGTGTGGAGCTACGGGATCGTCATGTGGGAAGTCATGTCCTACGGAGAGAGGCCTTACTGGGACATGACCAATCAAGATgtcaTCAATGCCATAGAGCAGGACTACCGGCTGCCCCCACCCATGGACTGTCCCAGCGCGCTGCACCAGCTCATGCTAGACTGCTGGCAGAAGGACCGAAACAACCGGCCCAAGTTCAGTCAGATCGTCAACAACCTCGACAAGATGATCCGCAATCCCAACACGCTGAAGGCCATGACCCCGTTATCTTCAGGtgTTCATCTCCCTCTCCTGGACCGCAGCATCCCAGACTTCTCCAGCTTCAGCACTGTGGACGAGTGGCTGGATGCCATCAAGATGGGCCAATACAAAGACAATTTTGCCAACGCTGACTTTTCTACATTTGATGTGGTGTCCCAGATGACCATGGAGTAA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56703 lncRNA upstream 34747 27653121 ~ 27653448 (+) True G42147
TU56605 lncRNA upstream 226436 27460521 ~ 27461759 (+) True G42085
TU56594 lncRNA upstream 241914 27442408 ~ 27446281 (+) True G42075
TU56592 lncRNA upstream 245856 27440480 ~ 27442339 (+) True G42074
TU56575 lncRNA upstream 255811 27419787 ~ 27432384 (+) True G42061
TU56793 lncRNA downstream 397499 28214748 ~ 28215179 (+) True G42211
TU56813 lncRNA downstream 743545 28560794 ~ 28561264 (+) True G42230
TU56849 lncRNA downstream 792968 28610217 ~ 28611502 (+) True G42249
XR_005638969.1 lncRNA downstream 1013359 28830608 ~ 28836904 (+) True LOC120557449
TU56979 lncRNA downstream 1063595 28880844 ~ 28881314 (+) True G42345
XM_039796437.1 mRNA upstream 70034 27610111 ~ 27618161 (+) True nmur3
XM_039796436.1 mRNA upstream 70034 27610111 ~ 27618161 (+) False nmur3
XM_039797119.1 mRNA upstream 146128 27521855 ~ 27542067 (+) False alpl
XM_039796540.1 mRNA downstream 58293 27875542 ~ 27876611 (+) True LOC120556812
XM_039798389.1 mRNA downstream 63844 27881093 ~ 27900596 (+) True lrrc38b
XM_039797398.1 mRNA downstream 143476 27960725 ~ 27964094 (+) True aadacl4
XM_039796541.1 mRNA downstream 147310 27964559 ~ 27966394 (+) True c4h1orf158
XM_039798897.1 mRNA downstream 549661 28366910 ~ 28369124 (+) True LOC120558056
XR_005639013.1 other upstream 989624 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 1139396 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 1139396 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 1414880 26268602 ~ 26273315 (+) True G41825
TU55525 other upstream 3927244 23757758 ~ 23760951 (+) False cbfa2t2
TU57106 other downstream 1423164 29240413 ~ 29242253 (+) True G42449
TU57834 other downstream 4642883 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 4653546 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 5220685 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 5370489 33187738 ~ 33212318 (+) True G43277

Expression Profile