RNA id: TU57076


Basic Information

Item Value
RNA id TU57076
length 1475
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G42425
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 29184138 ~ 29185612 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtGTATTGAAGCAGCACTTTATTGCAtaataatgtatatgagagtaacAGTAGAAGACAGTCGAGGGAGTCTAATAGATGTGACAGGAACATCCAGGAACACAATACAAATTCTTCTGATTTTTGTGTTCAGACTTTGAGGATCACGTTCAGATTCCCATCAACAACCTGGACCTGAGCGGTTTTTACTCTCCACCTTTTTGAAAGTCAGCCATTGTGGTCAAAGGCTACAGTCTTGTAGAGTGTCCCAGACTTTAAGTGAATAACCAAACTGCAGCTGCCAACACTGCTGATAAACTGACATGATGCTGCTGTTTAttgaaaactgaaaaactgATGGGAGAGGAGAAAGCAAAACTACAAGACTGGGTTGTGAGACAGGGAGGGCAGTGAGTGTCGCCATGTGAACAAAGCAGGAAACAATCTGTGAATCATAAAATGAAAAAGTTTGGACTGGGAATTACTACATATTAAGACAGGTTAGTAACTGCCTACAGTTGCAGCCCCTAGCGACGCTAAAGTAACGCAACACAGTTTGGTTTCTGCTCAACATGTTGACAAGAGGCTATATCACGAAGCAAAATTCTGACCAATCAGACTACTGAAAAACTGAAGTTATAATTACTACTGGTTCCTGACAGGGACAAAGGTCCTGAGTTTACAATAAAGTGACAAGAAATAAGGAGCAGTAGAGACTTTTTTATAGATCAGCAGACTCCCCACACTTATTTACAGACTTAACctttcttttatatttaaacattaatcCTACAACAGTTTATTTTATTCTAGTTGTGCGATTATGCTCAATATATTTCACCTCGATGTaaatctcttctttttttccacctCAGTAATATAATTTGCCCACAGTTTCATCTAGTTGTCATATCATGTTATTCATGGAGCTGATGACGTTACATGTGACGTCATCAGCTCCATGAAGAACATGATTGTTCACCATTTCTGGTGAACATGCTCAGAGCTGGATTAGTAAACCAAGAGATAGCTGAAAGTGAAGCCGGGTAACCTGAAAGGGAGCCAGACTAAGATGAACTGACTTTGTGATACAGGACCTAGGTGTCACAGAACGACATTCAACAAGCAACGGTTGCCATGTGCTGGTCAAATCTCTGAACTCTGAAATAAATCTCCTGACAGAGCTACAAGAGGAGCTTCTACGGAGACACAGAGCTGCAGCTACAAACAGACTTCAAGTCGGACAGGAAgtttgtgcgtgtttgtgtaaaGGAAGGAACAGCTAGTCCATTCCCAGAGTTCCCTGGGAATCAATTGTCATCGTCGTCATCATCATTGGCAGCCAGGGAAGTAAACAAGAGGTGGGAGGAGTCTAGTGCTGCGTCCACTTGATGCTCTTCAGATCGATGCCTTCTTGAACCATCTCCCACAGAggactgacagacacagagagagagacacggagagacagacaggttagtgGGCTTTACCTACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57048 lncRNA upstream 106882 29076964 ~ 29077256 (+) True G42403
XR_005638971.1 lncRNA upstream 187866 28993466 ~ 28996272 (+) True LOC120557469
TU57000 lncRNA upstream 263855 28919660 ~ 28920283 (+) True G42365
TU56997 lncRNA upstream 265943 28917635 ~ 28918195 (+) True G42362
TU56989 lncRNA upstream 284013 28899827 ~ 28900125 (+) True G42355
TU57078 lncRNA downstream 168 29185780 ~ 29186375 (+) True G42427
TU57079 lncRNA downstream 821 29186433 ~ 29186921 (+) True G42428
TU57077 lncRNA downstream 1362 29186974 ~ 29187714 (+) True G42426
TU57097 lncRNA downstream 40162 29225774 ~ 29228320 (+) True G42441
TU57111 lncRNA downstream 71143 29256755 ~ 29265775 (+) True G42453
XM_039797817.1 mRNA upstream 197550 28952854 ~ 28986588 (+) True st3gal8
XM_039796567.1 mRNA downstream 15228 29200840 ~ 29207769 (+) True c4h6orf89
XM_039798289.1 mRNA downstream 299555 29485167 ~ 29595866 (+) True LOC120557724
XM_039798903.1 mRNA downstream 444487 29630099 ~ 29636640 (+) True zgc:153675
XM_039798802.1 mRNA downstream 453994 29639606 ~ 29657185 (+) False hgh1
XM_039798804.1 mRNA downstream 454089 29639701 ~ 29657185 (+) True hgh1
XR_005639013.1 other upstream 2485567 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 2635339 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 2635339 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 2910823 26268602 ~ 26273315 (+) True G41825
TU55525 other upstream 5423187 23757758 ~ 23760951 (+) False cbfa2t2
TU57106 other downstream 54801 29240413 ~ 29242253 (+) True G42449
TU57834 other downstream 3274520 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 3285183 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 3852322 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 4002126 33187738 ~ 33212318 (+) True G43277

Expression Profile