RNA id: TU57111


Basic Information

Item Value
RNA id TU57111
length 8995
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G42453
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 29256755 ~ 29291745 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCAAATTCCAAtggctttattttatgtatatatatttgtatatatttatatatatttatatattatatattatgtcaCAACTTTTACTCAGTTGCTTGATTATCATCTTTTTGTTCAGCTTAAGTTCAAACGACATGACACTAAGACCAAGGCATTCCACATGATCATATCTTacaaaagagtaaagaaaacaacatgagtgtgtgtgcacctgtcgcacacacacacaccacacacatacatacgtcAGTGTACAGGTACAGTGGTTCTGTTTGTAGAAagaactgaaaaagaaaaagccgATAAAGAGACGAGAGACGGGCAGACAGAGTGAGAGTGTGAGGGAGAGAAAGTGAGAAACCAGATGAATCAATTGGTATTGAATAGCTGAACTGGAGGATTCTGTTGCATAGATTGAAGCAAACAGGAGGAGGGTGTTTGATCGAAACAGACAGaggatgtcacacacacacacacacacacacacacacacacacacacaggaagtttTATTTTGGCTAACAAACAACAAATCACTGCTGAGGCTCAGAATCTGCCAGACAGGATGACCAAAGACAGCGAGGTGGAGTCCTTTCTACACTTAAACAAGAGTCTACAGTCATGTgccagtgctttgagctaaacgctaacatgctgatgcttAGCAGGCTCACCAGCTCAGTTTAGCCTGTTACAGTAACATGCTACGATTAGCTAACTAGCACTAGACACAAGGTACAGCTGAGGCGGACGGGAATGTCGTTAGGTTTACGGGTAtttgttcataaaaaaaaagtattggacaaatgaaGACTTTGGCCTGATGATGGGGCTATATTCAGAATGAGAGGATCACCGTAGTTATTCTAGTCAATTATTAGGGGGAATGAATGTTTTTGGCAAATCTCATGACAATACATCTAATAGTTGGTGAAGCATTTCACTCAAAACGACAAATGTGAACTTCATGGTGATGTAAGAGGAAAAGTCATCAAGGAATAACAAAGTCATGAGGATTCACcctctggggaacatgaatgtttgTGCAAAATGTTATAGCCATCTATTGAATAGTTGAAGATATTTCAGCCTGGACCAAAGAAATCATTTGACTGCGTTtaggtaaaaaaacaaataaagaatTTGCCATGTCCTCGCCACAAGGCTTTGAAACAGCATTTAGACCTCCATGTTAGGgaataatatatacagtaaatgaataaagtagcataaatCCCCAAAAatttaagaacaagactttatTTTCGGTTGCATTTCAGAGCGATTTGGATTCATGACCCGTCTGTCCTGAATCCTGGCTGCCAGATTCGCCAAACTACCGTCTCAACACACTCGGTGCACTTTTAACATGACCACAAAGTCCAACATTCATTCCCACATTGATGCAGAACTTTAAAATGCTGTCAACACTGTTGCCATGACGGCCATTTGTACAGCCGGATAAAAACCAAAAAGTcaataaacacaacatttttatacCGATTTCGAATTTGAGGAGAGATGGTCAGTTGTGTTATGATGAAGTCAGAAGTTTGTTTCTAACAGGTAAACCGACTTGATGATAACTGAAGTCAGTGTGAGCAGATGTATGAAAACATCCACTCTGGTAAGATTATCACTCCCTATTCTCTGAATCCCGTTGcctttgttctctctcttttccagcCAGATTTTCAGATCagtttcatttctgtttttccagTACATACAGATAGGACAAGGCCAtgattagcctagcttagcgcAAAGACTGAAAGCATAGGGAAACTGCTAGTTTACCTCCATCAAAAGAGAAAATTTAATCGAATCCTAAAACTCCGGTTTGATTTACATCGTTGTATGTCGTTTATTGTTCAGGTGGAGGAATAGAAATCTAAAGAAGAGATGTTTTCTGGGGTCTTGTGTTTATGCTGTTCTCGAGTTTAACACCTCGATGAGAATAAAATCCGGAGCAGCGAATGATCAGATTCAAATGTAAATCCAGAGTTTTAACAGTGAACCAATATTTTCTGGAATTCCAAATCACAACCCTGCTCTCACCGATCAGACTGACCGTGATGTGAATTAGAGCCTGATCAATACCGATGTAAAATGTGTTTGAACGCATGAATAAACGATAAAACGATAAACCAAAATGATCAACAACAAAAGGAGGTTTTATAAGAATCTCCTACATTTGGTTATTAAAGGCGTTTAACACGTGGGATATTTTACCGCAGCTAAACCTTTATGTCAGTATAGCTGCTGAttcattttctcttgatcgattaATCAGCAACTGTTTTGATCATCCATTAATGTCAAACGTTCTTTGATTTCCGCTTCTCAAATTTGGAACTTTTCTTTGTCACATATGAAGTTgatctgaatatctttggggttTGGAACCATAGGCGCATTTTTCCACTAATTTATACAAAACGATATATTGatcaatgaagaagaaaaaaaaaggaaaagaatccTCAGCAGATGAATCAATATTAAGAATAACCATTAGTTGCAGCCATACATTAACTTGTCAGGTGGACACATTTCTAAATGACCATTTCTGTACCAACATTTCTTATCAGCAGACTTTGATATTGATACATATACGGACTTTATCTGTGACAAATACAATCAGCCATCATATCAGTCGGGCTCtaacaaggacacacacacttctacaGGTGAGCGACAAACTCCATTATCCTCGTTTTTCTCCACAACCTGGACCAGTAGAGAGAAGCAGACGATAATGGATCATGGAGAATCAATGGATCGGTGAGATGATGAAGCCTACCTGAAGGTTTCAGGTTAACTGTCAtcatctccctcctcctctcactGCACAGATGGCTGGGTGGTTCAGGAGAATCTGTGCAtctcagggtgtgtgtgtgtgtgtgtgggagtgtgtgtgttgggacaGAAGGATGAAACCGTGATAAGGTGGATGAGCAGACAGATCTGTTCtaagttatttttttcctgtATAAATGAGACGATGTAAACAAAAAGAAGAATCTTCATCTttcatcaatccatccatcagAAGTCACACAGTTTTAATTTCCTCAGTGTGTTTCATTTTACAGTGcaaatacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatgttgcaTGTGTTTGGGGCGTGTATTTGAGattaatttggaaaaaaaacaagtcgACATTTTGGGATGTTTCATTCCATACTAAAACATGCAGAACACAGAACATTGAACACAGATACTGAacagttaagtttttttttttaaactcttttcgCACAGAGTGGCTTTAGGCTACACGGAACACGACAGAACCAATCGCACCAGGTTGGACATATTGCTTTAAACCACCAAATTTTGTATATATGTCATGCATGCCACACTGATGATATTATGTTtatacaaaaataacaccaacgCCTATTACTGTGTATCATAGTAATTACAGAAAACAAATCTTTTTCAGTCTTTTTTGCAGTGAAGTTCAACTGAGAAaccatatacatatatttatctatgtatttatatataatatatatacacacatatatatactagatataaatatatagagataatatatatagatatatatattgaGTGGTTATGACTTTTCCAACTGTGAAATTCCAGTTTGTTTGAACCATTTTTTTGATTTGTGAATGTTGAAGTGAAGGTTCTCCAAAGAATACCTTAAGATCCGACAACAGGAAGCTGTTCTGGTAAAAGGCAGTGCTCTGAAGAGGAAGCAGTCAAAATGCAACGATGACTGGATAAGACGCGAGTTCCTTTTCCATACAGAAGTCCTATTGGAAAACTGAGATCTTGTGAACTCCACGTCTCTGATGGTGGGGGGGGGCTGTACTGTGCACCTGGCATGAGATGTGAGGGCAACCAGTCCAACAGAGGACCGCCACAGCCGCAGAAAGGCTACGGCAGGAGCAGAGGGACAGTCCTATCcaggtgggagggagggagggaggcgggGAGGACGGGAATGGTCATGGGACTGCAAACTTTCTAAAAACAAACTtgcacagaagaagaaaaaaaatgaaaagagaaaaacgACTTTGGCAGAACATCCTTAAAGCTTTGCCGGGTGATGATTGGCTGATTGCCCCCTCTCCCATTTCCTGTTACCGAGACACAGACAGCAGGTACGCTTCATTCACTTCTATGACAATATGTACATTGTACTGGCTGCAGGAGCACAGCTCTTCTGTCAGATTCAGCAGTTGAACaaaaacagagaggaaaagCGTCATCGTTGGGAATGGTGCGTCTCATTTATAGCCAACGGACACACGGCAGGAAGAGGAAGGGATGTCACGAGCGCTTTAATAGTCCTGCTCTCTTCCCGGGAAATGTTTCTGAAGTTGGTAGTTGTATTAAATGGCAATGACATCTACAGCTGCAGCTGTGTGCCGTCACAGGCTCCCCACCCCCCCTCTAATGTGCGGATTTCATGACCAAATCAAAAATATGGCATCCTCTTGTTCTTTGGCCTGAATTTAGACAAGTTAACCTGAGGTCCAGGGCCGCCCAAGCATTTTTGGGGCCCTAGTCATGATTAGacagcccccccccaccccacacccaAGTACGCAAacatgcacagcagcagttaacTTCAATTTATTACAATTAAATCAGTGAAagaaaaattttaaattaacgAAAATGGTTTGGCACAGAGTTGTCGTGGGAATTCAAAAttctaattataaaaaatacacaattttGAAAAGGCAACCTTTTACAGCAAAGCCATTACAGCTGCTGGTTACAGTAATTATTTGTATCTTTAAATACTGGGATTATGACAAATAAATTAACAGAGGAACTCAAAGAGAGTTCGCATTTTGTTTGGGGGGCCCCATGTTGGCGGAGGTCTTCTTGGGTCCCAATGGTTTCCAAGCAACAAGACCCAAGTCGGGCTGGGTTCATATTATACGACTGCGTCTAATTGGGGCGTGTAGGGTCCCTGCTGTTTTGCCCCAGATGTCAGAGCAATTTGGAGTTGGTctcttttaaaaaattaaaaaaagatttatgcACGTTAGGTTTGGGTAGCTTTTGTTTTTCATGGGTCCACTTTAAAAGACCTCGAGGCTAAGGGGTTCAAAGCAACTCATTGGTTCGTTTTATGATTGGGGCCCGGCCTCTGCTTTGGTCCTCAGGTTACTTTCTCAAGTTCTGGCTCCGTCTGAGGGGGTCAGAGCTTGTTTTGGGGTGAGACGTGCTGTAATAGGCCACGCCCCATTCAAAGGAGGCGGGGCCTGAAGCGGGACACAGCTGTGATCCTCTTTAAAGTCGTCAGCTCCGACACCAGTCGGTTGGAAAACAGCATCAGTCCACTCGTTCAAAGAAATCAAATCGTAGTAACTTCAAAGTACAGAAACAAAGAAACCCAGAGGTTGGATAAATAATTATACACTCCCATTTAATGTTTGATACAGTTAGCTGTATTCACTTTGTATTGGCTGAACTCTAGTTAGATAACTGCGAAATCACATAGCGTGTAGTGTGTCACAACATCTTGGATAAAGTGAATATACTCATGGAAAAGGGGGGGGCTGATGAGAAGAGATTGTTGAGATTCCAATTGAACAGCCGACAGGAAGTAAACAAGTCACTGCAGGTTTCTGAGCCCTAACGTCAGGTTACCAAGACGACACACGTGGCATAAATATTTAGAGAGCTGTAAAAAGACAGAGTCCACGTTAGATTCATCTCATCCATGTACTGCACTATCACCAAACTCTTCAgcctatacatatatattcatatatctccaaaatattaaaaagtacttaatataaaaatacagaAGAATTGTAAAAAATGAGCAAAACATTGAATTTTATATGAAAACCATGCAAGAAAGATCCCCCATTTAGTTAAATAGTAACTCTAAGACTCAGGAAAGCAAGGGAATGAAAAGGGAAGTGGTGGGATGAGAGAAGCGCAGGCGAACTGCCACCCACTTGCTTTTCATGTAAACATTGTAGAGGTCCTTTAAACATGGTTCGGCAGTGACGACTGAAGATTTTCTCCTTGCTTTTTGGTCATGTTTGGAGTAAAGGGCCAGGGGTTGAGAGGAAAGAAGGGTCGAGAAGGGGaggggtcaggggtgaaaaaagTCCAAAGGAAACCTCGATAAcaatgagataaaaaaaacaatacagacaACCTATAAAATATGGCTCTGAGTTACATAGAAAAAGCTCATCAGAGGGGAGAGGAAGAACCTAGTAATGACAAAAAAGTTGGAAATATGGCAGTACTAGCACATTACGTCAATAACGTGTGTCCTAGTTCGTAGATAAGTTGATGGCTGCTAGTCGAGGGGGGATTACACACATCGCTGCTTCTGATTGGAAGATGATTCCTTCTTCTTTTATGACAGTAATTGGAGGACAACGGCAGGCAGGAAGTACTGAGTGGCAGCAGGGATACGGTGCGTTTTAGTCTACAGGCTGACTGGTGACATCATCAGTCTCCCATAAACCTCAGCGTGTGTCACTGACCGCTGATTATTTTTATGTTCATAAATATCTGACAAACGAGGGGACCAAACACATCAGAAACGGGTAATAAGATTTGTCTTCAACACAGAGAGACGGTCCAGACCCTGTTTAGAGATCAATCAACTTCCTGTCTGTTGGAACTGAATTTCGTGCACGGTGACCCAAAACAGACTCATCGATACTGGATactggattttttttccattttcttctgAAGGGACAAAGGGATGAATACTTGTCATCCTGTGGCAGTAGTGTTCAGCTTGGGAGTCCAAACCTGAAAGATGTGAGCTAAATGTTTCCAGATAGCTGTAAGGGTCCACGTGACATTAACTTTGTCATCTGCGGCACAGTGGGGCAGTGTTTAGCGGGGGGTCGCCTCACAGTGTCACGGTCACAGGTTGtcatttttgattaattgcagtACTTCAAGAGGGCGGGTCTTATCTAATATGAGCCTGTCGGGGTAATGAGAACGCAAGAAAAGTTGGCAATTGAGACCGAGACTTACAATGAATGATATCCCTCATCTGTGAAATATTCTGCTTTAGTTTCTGTCTACTTGTTCGCCTAAATGAACGGTAAAGCAACGCCGAGCACCGTGCACGGTTATTAAAACGAGAAGAGGACTGGGGTGGGATGGTCCCAAGCAGGCGTCGAGTGGAGCGCCAGCAGAAAGATTTCAGGTTTCAGGTAAGGCTGCATTATATTCTCTTGTTAGCAATCAAGGCATTCAGCGTATGTCGTGGCCTCATTTCATCGGTGCTACCTCTGCCGTGACAACACCGCTAGCCGACTGCCGAGTACCCGCCTTTTGCCCGATATGAGGTGGGATGGGCTCCAGCCCCTTGCAACCCTGCACGGGTCTTCGTGGGTAAATTTACGTTCGCAAGAACAACATTTAGGACCATGTGGCGTACACGCAGATTATTGAGACACCCTGCTGTGGAGTATGTCAAGACTTGATCAAGTATTGATGagtctggttttttttttttgtgcggtTGTGGTAACGGGAAGTTCAGTCATAAAGACAAGGAAGTGAATGAAGCGCCGAACAGAAGCTGCTGCAGACTAACACACATATAGTCGTCTGAACAGAATCCCAAATACTCATTCCTAAGTTATCATGCGACTCAACACGAATGAAACATAACATGCATCCTACTAGAGCTGGAAACCTAGACCACGCTCCTGCTTCCTATCGACACTGTGGACGtactgggggtgggggtggggggggggagaaccAGAACCCTGACTGGATGAGATGAAGTCAGACCCTCACTAGGCAGGGAGGGAGCCCTCTCTGGACGCCGCCATGTTGGATATTTTTGGGTAAGTAAGCATTCTGTCCTTCAACAAGCAACACAGctgataaaagaaaaagcaaaCGCATAcagacaccaaaaaaaaaaaaaaggggaagaacATATTTTGAACAGTTGAACCTTTTAAGACCGTAGTGTCACACTCACAAGACATTCTCAGGAGTTTGAATGAACTATCGATTAACAATCGTTAAgaggtttttttaaaaaaaaacaaactaactaaattacatttttgcatTTGCCTAAAAATCTTCTGATCACCAAACCCGGCTGTTAGCTGTGTAGAGGAGCGGAAAAGCGTATGTACATGAGAATCACTGCACTCTCTGAAAAGTTctgtgccgttttttttttttttttggggagcgGGAATGAAGCGAGTACAGAACACGACATGCTGCTGCGAGTCCCGCAAAAGATCGAACCCAGCGTAGTTTAAAAGCTTTTCAAAAGGATCGTCAAGTAAAAAATATACATGAATGGGCAGGCCTCCACCCTCTACTGAGACATGtgtggtagtggtggtggtggtggtggtggagggacAAACTTACAGGCAGGATGACGCCACAGTCAGTATGAAAAACACATGGTGGCAGGAATGACTGAGAGGGGGTGAAGACGATGTgaagcgtgcgtgtgtgtgtgtgcagaatgAGGGGATGCAGAGTGACTTCCCTCCTCAGCGCGACAGTTCAGTTGATGGGATGACCGATGATGCTGAtaaagaggatggaggagggaggaggagctCAGATGGATGACTCGCAGCTGTGGGGGAAGGCGCTGGGcggctctcctcctcccccgGCCCCAGAGGAGGCGCTGGGGAGGAGGTCGATCTCGTCTCCGGTCTCCTCGATGGTGGGGATGCGAGCCTCCTCCTCGGACTGGGGGACGAACTCAGGATGGGCCATGAAGCTGTGGATGGAGCTACGGGACTCTGGGCTCTCCAGCCCCGCATACAGGGAGCTACGGAACGCGTTCACCACCTTAAtctgaaacaaagaaaagaagagaaacggTCAGAGAACGAGCACGTCCACAGCTTACCGACGGTTTACGAAAGCGTGATGTCACACAAGCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57097 lncRNA upstream 28435 29225774 ~ 29228320 (+) True G42441
TU57077 lncRNA upstream 69041 29186974 ~ 29187714 (+) True G42426
TU57079 lncRNA upstream 69834 29186433 ~ 29186921 (+) True G42428
TU57078 lncRNA upstream 70380 29185780 ~ 29186375 (+) True G42427
TU57076 lncRNA upstream 71143 29184138 ~ 29185612 (+) True G42425
XR_005639012.1 lncRNA downstream 199043 29464818 ~ 29466662 (+) True LOC120557726
TU57215 lncRNA downstream 395431 29661206 ~ 29661426 (+) True G42536
TU57353 lncRNA downstream 652988 29918763 ~ 29984988 (+) True G42655
TU57373 lncRNA downstream 726148 29991923 ~ 29994778 (+) True G42672
TU57376 lncRNA downstream 736898 30002673 ~ 30005924 (+) True G42674
XM_039796567.1 mRNA upstream 48986 29200840 ~ 29207769 (+) True c4h6orf89
XM_039797818.1 mRNA upstream 270167 28965173 ~ 28986588 (+) False st3gal8
XM_039798289.1 mRNA downstream 219392 29485167 ~ 29595866 (+) True LOC120557724
XM_039798903.1 mRNA downstream 364324 29630099 ~ 29636640 (+) True zgc:153675
XM_039798802.1 mRNA downstream 373831 29639606 ~ 29657185 (+) False hgh1
XM_039798804.1 mRNA downstream 373926 29639701 ~ 29657185 (+) True hgh1
XM_039797731.1 mRNA downstream 404694 29670469 ~ 29717340 (+) False nisch
TU57106 other upstream 14502 29240413 ~ 29242253 (+) True G42449
XR_005639013.1 other upstream 2558184 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 2707956 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 2707956 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 2983440 26268602 ~ 26273315 (+) True G41825
TU57834 other downstream 3194357 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 3205020 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 3772159 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 3921963 33187738 ~ 33212318 (+) True G43277
XR_005639022.1 other downstream 3996420 33262195 ~ 33336767 (+) True angpt4

Expression Profile