RNA id: TU57447


Basic Information

Item Value
RNA id TU57447
length 669
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G42725
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 30144457 ~ 30145125 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAACGTGCAGAAATCCACACTTAACCACAAAATACCTGTCAATCAATCAAAGTCGGCAGGACGGTGACGTGTTTTGATGAGGTTGTGTTGGAGAGGCCAATGTCGCTCCCACTTCTTCTGCTTCTGTCTGTCCCCTAACAAAACTACGACCATGAACATGTACCACGTCCTGCCTGCTGCAGGATTTTGTCCAAGTAATGATTTATTCAAATACGTGCCAGGTTACTGCTCGGAGACACTAGAGACAGACCATGCAGAATTAGACCAAGCTGTTGACAATACTCAACTTCTCTAGATTCCCTCCGTCTTACAGACAGTACTGTATTTGACAGCAGGTGTCGCTAACGCGACGGCTCGTCCAGGACGTGAAGACATGTTGGGTCAGTGTGAATCTGGGACTGAGGTTATAGCTAGTGACTGTGGAAGGTTAAATCAACAATCCCAGAGGAGTATTATGGCTGTAAAGAGACACTTTTATAAGTATGAAAACTGTCCAGtatttcttctctctctgtgtttaaaTAGCTTCTGAAATGTGGATGGTGACGTTTGATCGCGAAAGTTCAGTTCAGAGGCAGTTGTTGATTGCTGGTTGTTGCACCTTTTAACATCTAAATCAGTGGCAggggttatgtgtgtgttggtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57448 lncRNA upstream 132 30143378 ~ 30144325 (+) True G42726
TU57450 lncRNA upstream 1184 30142382 ~ 30143273 (+) True G42728
TU57449 lncRNA upstream 7448 30135986 ~ 30137009 (+) True G42727
TU57445 lncRNA upstream 34623 30109545 ~ 30109834 (+) False ergic3
TU57418 lncRNA upstream 104058 30036997 ~ 30040399 (+) True G42700
TU57478 lncRNA downstream 166470 30311595 ~ 30312042 (+) True G42752
TU57483 lncRNA downstream 173054 30318179 ~ 30332735 (+) True G42755
TU57494 lncRNA downstream 189099 30334224 ~ 30334815 (+) True G42766
TU57498 lncRNA downstream 192286 30337411 ~ 30339041 (+) True G42770
TU57500 lncRNA downstream 196605 30341730 ~ 30342069 (+) True G42772
XM_039797120.1 mRNA upstream 8623 30109535 ~ 30135834 (+) True ergic3
XM_039799137.1 mRNA upstream 37972 30102902 ~ 30106485 (+) True hesx1
XM_039798981.1 mRNA upstream 46224 30092167 ~ 30098233 (+) True LOC120558110
XM_039798414.1 mRNA upstream 55614 30086423 ~ 30088843 (+) True LOC120557789
XM_039797287.1 mRNA upstream 168466 29972496 ~ 29975991 (+) False LOC120557186
XM_039798602.1 mRNA downstream 49514 30194639 ~ 30198902 (+) False mych
XM_039798601.1 mRNA downstream 51161 30196286 ~ 30198902 (+) True mych
XM_039798610.1 mRNA downstream 209841 30354966 ~ 30377896 (+) True LOC120557912
XM_039798611.1 mRNA downstream 243885 30389010 ~ 30407845 (+) True LOC120557913
XM_039796713.1 mRNA downstream 283882 30429007 ~ 30442999 (+) False tomm34
TU57106 other upstream 902204 29240413 ~ 29242253 (+) True G42449
XR_005639013.1 other upstream 3445886 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 3595658 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 3595658 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 3871142 26268602 ~ 26273315 (+) True G41825
TU57834 other downstream 2315007 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 2325670 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 2892809 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 3042613 33187738 ~ 33212318 (+) True G43277
XR_005639022.1 other downstream 3117070 33262195 ~ 33336767 (+) True angpt4

Expression Profile