RNA id: TU57581


Basic Information

Item Value
RNA id TU57581
length 1496
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G42836
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 30673827 ~ 30677017 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccggtcaaaagttcggggccacttagaaatttccattccactccattacagacagaataccagctgagatcagggcagcagttttcagatgacattatgtgcttacataattgcaaaagggttctccactGTTGTAGAAAGACGTGGCTGATCtctaatgcaatatctacattacattgcccattatcagcaaccattcatctaatgttccaaaggcccattctgtttactaatctgatatcattttaaaaggctaactgagaaaacattggagaacccttttgcaagtatgtaagcacataatgtaatctgaaaactgctgccctgcttaaaaaaacaatgcaaccaATCTCAGcgggtattctgtctgtaaaggagtggaatggaaatttctaagtgaccccaaacttttgaccggtagtgtagaCATACagtAGCCATCAAATTCAGACATTATTTAAAGGAAATGACAAATGAGGCGACATTCTGGCAGAACAAGACTTccacttttaaaatgttcttagCTGAGAACTCAAAGCTGCGGTGACAGTTTTGacaaaaattatataaagttcAAACACACAGTTCTCGTTTCTTGTTGATGTCAGTGTTGCTCAGTGTAactaaaaaagaaagacaacacacacacacaatgcaataAAAAGGTCATTGTAAAACTGTATGTTATGCTGTATGACATAGTGAAAAGTGATCAGATTTGTAACAACTCCTGTAATATTACCAGACTAATTCCCAGGAGAACTACTTTTAATTTCCTCACTTTCGTTGCTAAAACACACTTCTACCCTAACAACCACGCTCTACTGCTACATTAGTGTAgacaaatgtacatactgtaattacacctATACATAGCCAGATTCTACTGCTCTCCAGactattcatcctgcacatacacttattcttactactcttatgttaccacactgcacatagctatacatactgtacatatctgtctatatggttcacacagaatatccatatttattctgtttttcttattatatattctgctaatacactgcatatatctatattattcttactactagtataatgtcactgctactacattgcacatgtctgtacatgttgttcatacattgttcatattacacagccatatttattctgttcttataacactgcaatatatttcttgtcctgcctatgcaccacctgtctatactttgtatattgCATTGCACTTTTTCTGCTTATTTTTTGCAACTCTGGTTAGATGTAAACTGCATTTCGCTGtctacttgtactctgcacaatgacaatgaaGTTGAATCTCATCTAATCTAGTCTAGTGATAGCTTTGGGTTGTTTTTACATACGTAAACAGTGACCTCTCAGCAATAACCAATGGATACAGTTTATTACAGCAGTTTAAAACAGACGGACTCTCTCAGTTGGACTGCTGTCTGGCGCCACCATGTTGCCGGTCTGTCCCACGCCGGATTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57532 lncRNA upstream 81232 30591943 ~ 30592595 (+) True G42797
TU57528 lncRNA upstream 145481 30518262 ~ 30528346 (+) True G42793
TU57527 lncRNA upstream 181986 30491600 ~ 30491841 (+) True G42792
TU57512 lncRNA upstream 223615 30405515 ~ 30450212 (+) True G42777
XR_005639035.1 lncRNA upstream 261427 30410280 ~ 30412400 (+) True LOC120557914
TU57621 lncRNA downstream 132812 30809829 ~ 30810064 (+) True G42870
TU57655 lncRNA downstream 215883 30892900 ~ 30893662 (+) True G42899
TU57675 lncRNA downstream 269355 30946372 ~ 30953050 (+) True G42918
TU57710 lncRNA downstream 707368 31384385 ~ 31384694 (+) True G42949
TU57712 lncRNA downstream 725067 31402084 ~ 31402447 (+) True G42951
XM_039799187.1 mRNA upstream 160339 30504694 ~ 30513488 (+) True abraa
XM_039796713.1 mRNA upstream 230828 30429007 ~ 30442999 (+) False tomm34
XM_039796712.1 mRNA upstream 230828 30429053 ~ 30442999 (+) True tomm34
XM_039796714.1 mRNA upstream 230828 30429564 ~ 30442999 (+) False tomm34
XM_039798611.1 mRNA upstream 265982 30389010 ~ 30407845 (+) True LOC120557913
XM_039798881.1 mRNA downstream 2299 30679316 ~ 30685535 (+) True lsm3
XM_039798972.1 mRNA downstream 144664 30821681 ~ 30873506 (+) True LOC120558103
XM_039797122.1 mRNA downstream 700963 31377980 ~ 31417492 (+) True zgc:171566
XM_039796522.1 mRNA downstream 1703665 32380682 ~ 32444324 (+) True rspo4
XM_039797652.1 mRNA downstream 1970582 32647599 ~ 32730753 (+) True ripor3
TU57106 other upstream 1431574 29240413 ~ 29242253 (+) True G42449
XR_005639013.1 other upstream 3975256 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 4125028 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 4125028 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 4400512 26268602 ~ 26273315 (+) True G41825
TU57834 other downstream 1783115 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 1793778 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 2360917 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 2510721 33187738 ~ 33212318 (+) True G43277
XR_005639022.1 other downstream 2585178 33262195 ~ 33336767 (+) True angpt4

Expression Profile