RNA id: TU57714



Basic Information


Item Value
RNA id TU57714
length 1166
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G42953
representative True

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 31418426 ~ 31419591 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCACATCATCAGGTGCACCTGATGTTTTAAATAGTTTCATCCCATTCCTGTGCCTCTAACTTCCTGAAGAAGTTGGTTTTAAACTGATGATGCCAGATGAATTAAAggcattttaaaaaacatttcttaagaTGAGTGCCTTGGGCTTTTCCTTGATGTCTATTGGGCTATATTCTACCTCCAATTAGCCCCAATAACCACAAACTAAATTAAATCAAACATATCCAAATATCCAGTTGTCAGGGTGTCTTTCGTTGCAGCACAGCATTCCCatgtttttaaaatgctttATTGGATACCTTTGCTGGTGTTTGCCACTATTAAATGACTCAAAAGTCCACCATACAGGACTTAACAGACTGAGTGATCAGTGAGAGAAGAGTTTTGTGATGAGCTGCTGTTTCAGTATCTGTCTGAAATAATGAATGTGAGTCCGTAATGTTATTTCTGTCAAAATGGAAACATACTCTGCCACCTGTATTCCAAGTTGTTCAACCCTCTATGTCTGTAAGCAAAAACAGCATTCAGAGTGTATGTCAATGAGAAATGGAAATCCGTTTACCAACTTATCTTTTTAAAAATAACTACTTTCCTATTTTGAAGTTGTATAGtcattttgtaattttgttcCAGAGGCAAATATCAATAATCCCAAAACTCTATAGATGAGTCTTGAGAAAGAGTTCATCATGACATGATTGTATTCTTGTGTCTCTGTGGGCCTTTCCACAGAGTGGagtatttgtattttgtatatcacattgtcAGAGAATGCTATATGTCTGTAGAGATTATCAGAATTTGAAAAATTATAGTTTTTACATTGAAACATTTTCAGTAGCAATTTCAGTAGGCTCAAGTAGTGGCATTTATTTTACACGATTGTCTGATTTTGAAATGTAACATTGAATGTTTAATGCTCTGGCATGAACTGTCTTCACACTTTCTTCATTCatccaatttttttaaactagtaTACCAAACCAATAAGGCTCATCATTTtcggttttctttttaaaatgttatcagattattattattatttcagtctAGTTGAAATTATTTTCACGCATTTTGCATCCCCACAATGAAACATTGTTTCTTGCTGCAAGAGAAGTCTTCTGCTGAAAAATACAGCCaatgtgaaaataaataattacaaaaCC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU57712 lncRNA upstream 15979 31402084 ~ 31402447 (+) True G42951
TU57710 lncRNA upstream 33732 31384385 ~ 31384694 (+) True G42949
TU57675 lncRNA upstream 465376 30946372 ~ 30953050 (+) True G42918
TU57655 lncRNA upstream 524764 30892900 ~ 30893662 (+) True G42899
TU57621 lncRNA upstream 608362 30809829 ~ 30810064 (+) True G42870
TU57718 lncRNA downstream 9144 31428735 ~ 31428955 (+) True G42956
XR_005638898.1 lncRNA downstream 18672 31438263 ~ 31442128 (+) True LOC120556847
TU57725 lncRNA downstream 28418 31448009 ~ 31448390 (+) True G42962
XR_005638884.1 lncRNA downstream 145857 31565448 ~ 31569609 (+) False LOC120556663
TU57747 lncRNA downstream 148675 31568266 ~ 31569599 (+) True LOC120556663
XM_039797122.1 mRNA upstream 934 31377980 ~ 31417492 (+) True zgc:171566
XM_039798972.1 mRNA upstream 544920 30821681 ~ 30873506 (+) True LOC120558103
XM_039798881.1 mRNA upstream 732891 30679316 ~ 30685535 (+) True lsm3
XM_039799187.1 mRNA upstream 904938 30504694 ~ 30513488 (+) True abraa
XM_039796712.1 mRNA upstream 975427 30429053 ~ 30442999 (+) True tomm34
XM_039796522.1 mRNA downstream 961091 32380682 ~ 32444324 (+) True rspo4
XM_039797652.1 mRNA downstream 1228008 32647599 ~ 32730753 (+) True ripor3
XM_039797650.1 mRNA downstream 1228008 32647599 ~ 32730753 (+) False ripor3
XM_039797654.1 mRNA downstream 1228008 32647599 ~ 32730753 (+) False ripor3
XM_039797651.1 mRNA downstream 1247920 32667511 ~ 32730753 (+) False ripor3
TU57106 other upstream 2176173 29240413 ~ 29242253 (+) True G42449
XR_005639013.1 other upstream 4719855 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 4869627 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 4869627 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 5145111 26268602 ~ 26273315 (+) True G41825
TU57834 other downstream 1040541 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 1051204 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 1618343 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 1768147 33187738 ~ 33212318 (+) True G43277
XR_005639022.1 other downstream 1842604 33262195 ~ 33336767 (+) True angpt4

Expression Profile


TU57714 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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TU57714 Expression in each Bioproject

Bar chart with 7 bars.
TU57714 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 70.
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