RNA id: TU57718


Basic Information

Item Value
RNA id TU57718
length 221
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G42956
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 31428735 ~ 31428955 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctagtctcggttcggagcatgtgtgtaccgaacggttcgtcagtacactgttaatgtgcactaacctcttactgccgtagtgcccactttatacacctatgttaaaacacttactggcaatgacgagcgggatgggcgtgacaaacgcaatcCATGGCAGatgattggacgattgcgtcacatgggtctggctggtcccaaatttcaaaacataCTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57714 lncRNA upstream 9144 31418426 ~ 31419591 (+) True G42953
TU57712 lncRNA upstream 26288 31402084 ~ 31402447 (+) True G42951
TU57710 lncRNA upstream 44041 31384385 ~ 31384694 (+) True G42949
TU57675 lncRNA upstream 475685 30946372 ~ 30953050 (+) True G42918
TU57655 lncRNA upstream 535073 30892900 ~ 30893662 (+) True G42899
XR_005638898.1 lncRNA downstream 9308 31438263 ~ 31442128 (+) True LOC120556847
TU57725 lncRNA downstream 19054 31448009 ~ 31448390 (+) True G42962
XR_005638884.1 lncRNA downstream 136493 31565448 ~ 31569609 (+) False LOC120556663
TU57747 lncRNA downstream 139311 31568266 ~ 31569599 (+) True LOC120556663
TU57750 lncRNA downstream 207023 31635978 ~ 31636937 (+) True G42986
XM_039797122.1 mRNA upstream 11243 31377980 ~ 31417492 (+) True zgc:171566
XM_039798972.1 mRNA upstream 555229 30821681 ~ 30873506 (+) True LOC120558103
XM_039798881.1 mRNA upstream 743200 30679316 ~ 30685535 (+) True lsm3
XM_039799187.1 mRNA upstream 915247 30504694 ~ 30513488 (+) True abraa
XM_039796714.1 mRNA upstream 985736 30429564 ~ 30442999 (+) False tomm34
XM_039796522.1 mRNA downstream 951727 32380682 ~ 32444324 (+) True rspo4
XM_039797652.1 mRNA downstream 1218644 32647599 ~ 32730753 (+) True ripor3
XM_039797650.1 mRNA downstream 1218644 32647599 ~ 32730753 (+) False ripor3
XM_039797654.1 mRNA downstream 1218644 32647599 ~ 32730753 (+) False ripor3
XM_039797651.1 mRNA downstream 1238556 32667511 ~ 32730753 (+) False ripor3
TU57106 other upstream 2186482 29240413 ~ 29242253 (+) True G42449
XR_005639013.1 other upstream 4730164 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 4879936 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 4879936 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 5155420 26268602 ~ 26273315 (+) True G41825
TU57834 other downstream 1031177 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 1041840 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 1608979 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 1758783 33187738 ~ 33212318 (+) True G43277
XR_005639022.1 other downstream 1833240 33262195 ~ 33336767 (+) True angpt4

Expression Profile