RNA id: XR_005638884.1


Basic Information

Item Value
RNA id XR_005638884.1
length 871
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id LOC120556663
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 31565448 ~ 31569609 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTGGACATCAGCCACGAGGTGGAAAAGGACTGGGACCACCAGACTGTTTTAGAACGCATCAGGGATGGCTTTGGTGAGCACCTTCCAGACGATGTCAGCTATAAGAGAGGACTGGTAATACATTGCTGGCAAAGCCATTGCTGTGAGCTTGGTACATGGCGGTCCACCACCAAACTTCCTCTCTCAGACATAGCTGACACAGAACTCTTGGAAAAGTCAAAAAGATTCTGTGAAGGACTGAAAACTCTTTGGGTTCAGGACCAAATACGACGACATCCAGACAGCTTTCGACCCCTGTTCTGCTATGAGCTGTGGATGATCTTTTCAGCATTCGTCTCTCTCCAGAAGGGAGCAACAAGAGAGCTGCTGACGAGATGGTCGTTACTTTCTGGAGGGACTATCTCCAAAATGCAGAGGaaGAAGAAGGGCCATCCAAACTAGAGAAGATATTGGCCTTCACAACTTGAGCATCTGACCAGTTCATTCACAAAGGAGATGATGGCTTCTCTACATCAATGTTCCCTCTTGCCAACAGATGTGTTAACTGCATCAACTTGCCACTACATGTGTCTTACCAACTGTTCAAGGAGAAGTTTGACTTTGCATTAGGGAACACATATGGGTTTGGCAGGGCATGAACATGTCATGCTCTGAaaactgtttctgtctgtgtctcactttctctgtttcaaacaAGAGTTATTATTTTCACTTCTGAATGCCGTATGCAATATAActtatgtattttatatagtTTCACCACGATTCAGTTGACTCAGTCAGCCTatgttttaaaacatatttacattttaacggCATGTTTCATATTTTTACCAAACTTTTTACcaaatgttaatttatttttcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57725 lncRNA upstream 117058 31448009 ~ 31448390 (+) True G42962
XR_005638898.1 lncRNA upstream 123320 31438263 ~ 31442128 (+) True LOC120556847
TU57718 lncRNA upstream 136493 31428735 ~ 31428955 (+) True G42956
TU57714 lncRNA upstream 145857 31418426 ~ 31419591 (+) True G42953
TU57712 lncRNA upstream 163001 31402084 ~ 31402447 (+) True G42951
TU57750 lncRNA downstream 66369 31635978 ~ 31636937 (+) True G42986
TU57753 lncRNA downstream 129169 31698778 ~ 31761431 (+) True G42989
XR_005639070.1 lncRNA downstream 211868 31781477 ~ 31787872 (+) True LOC120558237
TU57818 lncRNA downstream 783477 32353086 ~ 32353560 (+) True G43037
TU57833 lncRNA downstream 890055 32459664 ~ 32459875 (+) True G43044
XM_039797122.1 mRNA upstream 147956 31377980 ~ 31417492 (+) True zgc:171566
XM_039798972.1 mRNA upstream 691942 30821681 ~ 30873506 (+) True LOC120558103
XM_039798881.1 mRNA upstream 879913 30679316 ~ 30685535 (+) True lsm3
XM_039799187.1 mRNA upstream 1051960 30504694 ~ 30513488 (+) True abraa
XM_039796714.1 mRNA upstream 1122449 30429564 ~ 30442999 (+) False tomm34
XM_039796522.1 mRNA downstream 811073 32380682 ~ 32444324 (+) True rspo4
XM_039797652.1 mRNA downstream 1077990 32647599 ~ 32730753 (+) True ripor3
XM_039797650.1 mRNA downstream 1077990 32647599 ~ 32730753 (+) False ripor3
XM_039797654.1 mRNA downstream 1077990 32647599 ~ 32730753 (+) False ripor3
XM_039797651.1 mRNA downstream 1097902 32667511 ~ 32730753 (+) False ripor3
TU57106 other upstream 2323195 29240413 ~ 29242253 (+) True G42449
XR_005639013.1 other upstream 4866877 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 5016649 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 5016649 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 5292133 26268602 ~ 26273315 (+) True G41825
TU57834 other downstream 890523 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 901186 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 1468325 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 1618129 33187738 ~ 33212318 (+) True G43277
XR_005639022.1 other downstream 1692586 33262195 ~ 33336767 (+) True angpt4

Expression Profile