RNA id: TU57843



Basic Information


Item Value
RNA id TU57843
length 811
RNA type TUCP
GC content 0.62
exon number 1
gene id G43051
representative True

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 32470795 ~ 32471605 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TAACTGATCCAGCTCCACTGATGGCGCCATCAGGCCCGTTTCCTCTGAGGAGCCCTGCTCACCTACAAGCACGTCACTCCTTAGTTTCAAATCGAGGTCCGTTCCCCCCACGCCGTACGAGTTGAGCATGCTCTGGCCCCCCGCCGCCGAATTGAACGGGAAACCGTTGAGGGCGTCTTTGGACGCCTTCCCTCCGTGTAAAGCATCTGCAGACAGGGGGTCATGCTGCAGCACACCCAGCTCCAGGGTTTCATCCAGAGGGGGACAGTCGAGGAAATCTCCCCGGGAGCCAGGAACTATTCCCAGACTTGGGGAGGCAGAATTTTGGGCGTCCAACGGCAGAGGTTGGAGGTGAgggtgagaggaggaggaagaggaaggagaaggagcCGATGGAGGCACGGAGTGATGCTGGTGGTGggcgtggtggtggtggtgagagGACTGGTGGGGATACTCGGGGGGCTGAGGGGAGTGGCGACCCAGACCCGAATCATACAGGCAGCAGTGAGGCAGAGGCAGCTGCGGATTAGACGAGGACGACGAAGAAGTGATGCTAGAGTGAGTCACCAAGCCCGGGTGGTGGTGGCTCTGGGGGTGAAGATGAGCTGGGTGCCCCCTGACGTAGTTCCTGTGAGCTTCCAGGAAGCTCAGCTGGGGGTCGTTCAGGATGTAGAAGTCGGTGCGGCTCAGGCCGTGGCGCGCCGCCCCGATCAGGAGGTCGCGGTCGTGTTTGCCAGACTCCCACCAGACTGGAAGGTAGAGGGAGGGGCGGCACAGCTGGAGGCGGGCCGAGAGCAACGGGTGACGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU57841 lncRNA upstream 1712 32468847 ~ 32469083 (+) True G43049
TU57840 lncRNA upstream 2985 32467506 ~ 32467810 (+) True G43048
TU57836 lncRNA upstream 4580 32464759 ~ 32466215 (+) True G43047
TU57835 lncRNA upstream 8483 32462039 ~ 32462312 (+) True G43046
TU57833 lncRNA upstream 10920 32459664 ~ 32459875 (+) True G43044
TU57886 lncRNA downstream 200632 32672237 ~ 32743785 (+) False G43089
TU57889 lncRNA downstream 200632 32672237 ~ 32744384 (+) True G43089
TU57890 lncRNA downstream 216416 32688021 ~ 32743785 (+) False G43089
TU57907 lncRNA downstream 279187 32750792 ~ 32755672 (+) True G43106
TU57912 lncRNA downstream 297651 32769256 ~ 32769602 (+) True G43111
XM_039796522.1 mRNA upstream 26471 32380682 ~ 32444324 (+) True rspo4
XM_039797122.1 mRNA upstream 1053303 31377980 ~ 31417492 (+) True zgc:171566
XM_039798972.1 mRNA upstream 1597289 30821681 ~ 30873506 (+) True LOC120558103
XM_039798881.1 mRNA upstream 1785260 30679316 ~ 30685535 (+) True lsm3
XM_039799187.1 mRNA upstream 1957307 30504694 ~ 30513488 (+) True abraa
XM_039797652.1 mRNA downstream 175994 32647599 ~ 32730753 (+) True ripor3
XM_039797650.1 mRNA downstream 175994 32647599 ~ 32730753 (+) False ripor3
XM_039797654.1 mRNA downstream 175994 32647599 ~ 32730753 (+) False ripor3
XM_039797651.1 mRNA downstream 195906 32667511 ~ 32730753 (+) False ripor3
XM_039798905.1 mRNA downstream 348365 32819970 ~ 32834491 (+) True psmf1
TU57834 other upstream 9932 32460132 ~ 32460863 (+) True G43045
TU57106 other upstream 3228542 29240413 ~ 29242253 (+) True G42449
XR_005639013.1 other upstream 5772224 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 5921996 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 5921996 26542507 ~ 26548799 (+) False G41850
TU58042 other downstream 566329 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 716133 33187738 ~ 33212318 (+) True G43277
XR_005639022.1 other downstream 790590 33262195 ~ 33336767 (+) True angpt4
TU58196 other downstream 868723 33340328 ~ 33345806 (+) False LOC120557806
TU58589 other downstream 2193631 34665236 ~ 34667182 (+) True G43656

Expression Profile