RNA id: TU58222


Basic Information

Item Value
RNA id TU58222
length 220
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G43356
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 33388181 ~ 33423815 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaattccactaattaaccctgacaaagcacacctgtgaagtgaaaaccatttcaggtgactacctcatgaagctcattgagagaacaccaagggtttgcggagttatcaaaaaattccactaattaaccctgacaaagcacacctgtgaaggtaaaaccatttcaggtgactacctcatgaagctcattgagagaacaccaagggtttgcagagtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58193 lncRNA upstream 49933 33337962 ~ 33338248 (+) True G43330
XR_005639019.1 lncRNA upstream 332798 33043108 ~ 33055383 (+) True LOC120557802
XR_005639020.1 lncRNA upstream 332803 33043108 ~ 33055378 (+) False LOC120557802
TU58019 lncRNA upstream 421899 32962251 ~ 32966282 (+) True G43195
XR_005638889.1 lncRNA upstream 476306 32909188 ~ 32911875 (+) True LOC120556764
TU58268 lncRNA downstream 96048 33519863 ~ 33520069 (+) True G43395
TU58283 lncRNA downstream 117645 33541460 ~ 33541666 (+) True G43408
TU58284 lncRNA downstream 129560 33553375 ~ 33555178 (+) True G43409
TU58288 lncRNA downstream 135485 33559300 ~ 33563489 (+) True G43412
TU58290 lncRNA downstream 144652 33568467 ~ 33568910 (+) True G43413
XM_039798475.1 mRNA upstream 34358 33353406 ~ 33353823 (+) True LOC120557839
XM_039798471.1 mRNA upstream 36245 33351368 ~ 33351936 (+) True LOC120557835
XM_039798430.1 mRNA upstream 39615 33346791 ~ 33348566 (+) True LOC120557808
XM_039798429.1 mRNA upstream 42379 33340284 ~ 33345802 (+) True LOC120557806
XM_039798428.1 mRNA upstream 54396 33262195 ~ 33333785 (+) False angpt4
XM_039798468.1 mRNA downstream 11712 33435527 ~ 33436108 (+) True LOC120557833
XM_039798467.1 mRNA downstream 79983 33503798 ~ 33504308 (+) True LOC120557832
XM_039798464.1 mRNA downstream 93023 33516838 ~ 33518124 (+) True LOC120557830
XM_039798455.1 mRNA downstream 336275 33760090 ~ 33765508 (+) True barx1
XM_039798454.1 mRNA downstream 336286 33760101 ~ 33765508 (+) False barx1
TU58196 other upstream 42375 33340328 ~ 33345806 (+) False LOC120557806
XR_005639022.1 other upstream 51414 33262195 ~ 33336767 (+) True angpt4
TU58122 other upstream 175863 33187738 ~ 33212318 (+) True G43277
TU58042 other upstream 346917 33037934 ~ 33041264 (+) False LOC120556790
TU57843 other upstream 916576 32470795 ~ 32471605 (+) True G43051
TU58589 other downstream 1241421 34665236 ~ 34667182 (+) True G43656
TU58590 other downstream 1241421 34665236 ~ 34667182 (+) False G43656
TU58591 other downstream 1241421 34665236 ~ 34667182 (+) False G43656
XR_005639074.1 other downstream 2016162 35439977 ~ 35440139 (+) True LOC120558245
unassigned_transcript_205 other downstream 2039957 35463772 ~ 35486235 (+) True LOC120556915

Expression Profile