RNA id: TU58283


Basic Information

Item Value
RNA id TU58283
length 207
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G43408
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 33541460 ~ 33541666 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgtaaaacttcaaataatagccgaGTCCCAAATAGACGCCTGTCTCTTTTAAACGCCTGGTGTGACAACAGATTTGGGTAAATAAAGGCCGGTCTCAAATAGAGGCCtggtctgttttttgttttttttcgtgtCGGGTTGTATTTGATCTTTTAAAACCCGTCAGATCGTTTGTtctatgttttgatttgatttcacgtGACAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58268 lncRNA upstream 21391 33519863 ~ 33520069 (+) True G43395
TU58222 lncRNA upstream 117645 33388181 ~ 33423815 (+) True G43356
TU58193 lncRNA upstream 203212 33337962 ~ 33338248 (+) True G43330
XR_005639019.1 lncRNA upstream 486077 33043108 ~ 33055383 (+) True LOC120557802
XR_005639020.1 lncRNA upstream 486082 33043108 ~ 33055378 (+) False LOC120557802
TU58284 lncRNA downstream 11709 33553375 ~ 33555178 (+) True G43409
TU58288 lncRNA downstream 17634 33559300 ~ 33563489 (+) True G43412
TU58290 lncRNA downstream 26801 33568467 ~ 33568910 (+) True G43413
TU58340 lncRNA downstream 234524 33776190 ~ 33776391 (+) True G43444
XR_005639024.1 lncRNA downstream 242661 33784327 ~ 33785135 (+) True LOC120557846
XM_039798464.1 mRNA upstream 23336 33516838 ~ 33518124 (+) True LOC120557830
XM_039798467.1 mRNA upstream 37152 33503798 ~ 33504308 (+) True LOC120557832
XM_039798468.1 mRNA upstream 105352 33435527 ~ 33436108 (+) True LOC120557833
XM_039798475.1 mRNA upstream 187637 33353406 ~ 33353823 (+) True LOC120557839
XM_039798471.1 mRNA upstream 189524 33351368 ~ 33351936 (+) True LOC120557835
XM_039798455.1 mRNA downstream 218424 33760090 ~ 33765508 (+) True barx1
XM_039798454.1 mRNA downstream 218435 33760101 ~ 33765508 (+) False barx1
XM_039798431.1 mRNA downstream 484645 34026311 ~ 34040283 (+) True znf831
XM_039798434.1 mRNA downstream 484645 34026311 ~ 34040283 (+) False znf831
XM_039798432.1 mRNA downstream 484645 34026311 ~ 34040283 (+) False znf831
TU58196 other upstream 195654 33340328 ~ 33345806 (+) False LOC120557806
XR_005639022.1 other upstream 204693 33262195 ~ 33336767 (+) True angpt4
TU58122 other upstream 329142 33187738 ~ 33212318 (+) True G43277
TU58042 other upstream 500196 33037934 ~ 33041264 (+) False LOC120556790
TU57843 other upstream 1069855 32470795 ~ 32471605 (+) True G43051
TU58589 other downstream 1123570 34665236 ~ 34667182 (+) True G43656
TU58590 other downstream 1123570 34665236 ~ 34667182 (+) False G43656
TU58591 other downstream 1123570 34665236 ~ 34667182 (+) False G43656
XR_005639074.1 other downstream 1898311 35439977 ~ 35440139 (+) True LOC120558245
unassigned_transcript_205 other downstream 1922106 35463772 ~ 35486235 (+) True LOC120556915

Expression Profile