RNA id: TU58420


Basic Information

Item Value
RNA id TU58420
length 2172
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G43514
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 34075871 ~ 34147068 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGTACCATAGACGGTGTCCaaacattattatcatattcaGAAAGACGGAATACGTCAGAAGGCTcaatcatatttaccataagaatgaagtgaactctttttcttgattagggtaacgacatagcaaacaaaaaaaacaaatctgaagACCAAACATAATCTGCTAAAATCCCTGGACCTTAATGTCACTGGTTAATGTCACATCAGACTAGTGCCTTATAATTTGTGTAAagaatgtgttatgtatttaaccattaaaataacctggtgtgaagtgtgaacatttACTAATTTCATATCTACCCATACGGCGAAGTCAAATTTTCCATAAAGCTGATAATTAAATTATCCAATAGCATCAAATGCTTCCCTCCTttggttattttaatataaatcaattgAAGCACGCTCAGTGCAATTATCAAAGCTCTCACAGAGTGAAAGTTTGAGAAGAATCAGAATAAAACTAACCCCTCCTTGTCTCTAACCTCATTAAGTGCTGTCAGAGCACAAATAAAATTCAGTTATTCTATGTGTGTGGTTTCACTGGAAATAGCTTATTTCTGTGAGCGAAGAAATGGTGAACAAAAATCATTATAACCTACATCACGCATACATTTCTTAACTAAACCAAGTCATACTTTAGTAGAAAATGCATCTATTAGATAATCTTTCAAATGTCgaatgtggtgtctgtgtgtcgtcaatgtggaaagtgaaattacctcaatgtaataaaagatcCACAAGGAACTTTTCCTGAGTTCTAAAGCACACAACGAAATGGCCTAGGTCTTTATACTTAACTTTGttcaatattaacaatattgctgtttaggaataatttactttctttcaTCAATCTATCAGTTGAGTTTGTGTGGTCATGAGGAACCACATAAGGTACGAAACCCCAATTAGCCCCAATTTAGTAGCATTCGTATACCAACCACCATTTTCTCATTGATATGGAAAGTAGTGAACGCATCACCCGTCTTTTCCTCCAGTCACCCTAATGTGttggtgtatgtaaatgttgggaggAATGGTTACACGTGATTTATCATACTTTTCAAAAACCATAAATGCAATAGAAAATCATATTAATCACActacaaatgtggaaaaaaacccCATGTTCTTCTTGAAGGGTACCTGTTCCAGTCCTTTCTGTCCGTCtgctccttgtgtgtgtgttcagagcacTCTgctctgaaagtgtgtgtgtttatctcagaggaatgtcaacagttcctcaaaagaatgtgcagtgagtgtgtgtgtgttcagagagagagatatggtgTGTCCTCTACAATTGTGAAGTATattctgctgtcactgtcagagaatgtgctgtggttgtcagagaagagatcagtatcactgctgtcttctgaaaagattttaaacagcaggctacaataccagtatgtagcttctggtttttccctccttggaaaaacttcttgtttttctcctctctcaatGTGTGGCAAACAGTGAGAAAACTCCAGTTTCCCCTGTCGCTTCAGAAATGGCACGTAGGTGACTCAGCAGAGGATCTGCTCGTCACTTGTTGCAGGTTGTAGAAAAACCTGTTCTCTCCTCCACATCTGGAACCTTTTGTAGTGATGCGTGTATCCAGGTGACTCTCCCTGGAACCTTTCACTGCCCTGTGTGTCACTGGAAGGATCTCGATGGTCTCTGTCACCGTCTATTTGCCAATCCTTCCTCCTGAAGTTGTTATCACCCCAGAATCCCCAGGCTTGACACCTGGATTCTTACGGccaaaagagcagaagaaaattcTCACGTAATAACCTAACCTATCATTTCCCTTATACTGCCGTGGAAGAAAtaggtgtttttgtttatggGCCTCTCCCTACGTATgtctaaataaagaaaatctttAGAGCAAAATTCTTTAGAGCAGATCAGAACCAATAAAACAATTACTATTGCATCCCCTTACACTACTGTGTCAATCAGGGGTAGAtgatccttttgtttacagttgaactatcaattttgtcaattttgttctcagctaagcagattttctcaaTGTACAATTGTTAACTATTCTAGCACTTTGGTTATCCAAGGTCTTTTAAGCTGGagctacagtgatgtcacaacaaatgtttcaaacgtCTTTAGAAAA

Function

GO: NA

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58417 lncRNA upstream 4799 34070870 ~ 34071072 (+) True G43512
TU58375 lncRNA upstream 119715 33955957 ~ 33956156 (+) True G43474
TU58348 lncRNA upstream 207324 33867580 ~ 33868547 (+) True G43452
XR_005639024.1 lncRNA upstream 290736 33784327 ~ 33785135 (+) True LOC120557846
TU58340 lncRNA upstream 299480 33776190 ~ 33776391 (+) True G43444
XR_005639028.1 lncRNA downstream 10937 34158005 ~ 34159010 (+) True LOC120557850
TU58441 lncRNA downstream 27441 34174509 ~ 34174806 (+) True G43533
TU58445 lncRNA downstream 46960 34194028 ~ 34194326 (+) True G43537
XR_005639027.1 lncRNA downstream 76364 34223432 ~ 34229932 (+) True LOC120557849
XR_005639026.1 lncRNA downstream 184376 34331444 ~ 34333902 (+) True LOC120557848
XM_039798460.1 mRNA upstream 8529 34047432 ~ 34067342 (+) True LOC120557827
XM_039798461.1 mRNA upstream 8529 34047432 ~ 34067342 (+) False LOC120557827
XM_039798431.1 mRNA upstream 35588 34026311 ~ 34040283 (+) True znf831
XM_039797130.1 mRNA downstream 223161 34370229 ~ 34371094 (+) True LOC120557093
XM_039797860.1 mRNA downstream 857874 35004942 ~ 35006128 (+) True LOC120557490
XM_039797861.1 mRNA downstream 1016416 35163484 ~ 35199996 (+) True ube2v1
XM_039796701.1 mRNA downstream 1128029 35275097 ~ 35278434 (+) True LOC120556883
XM_039796513.1 mRNA downstream 1169409 35316477 ~ 35319169 (+) True LOC120556789
TU58196 other upstream 730065 33340328 ~ 33345806 (+) False LOC120557806
XR_005639022.1 other upstream 739104 33262195 ~ 33336767 (+) True angpt4
TU58122 other upstream 863553 33187738 ~ 33212318 (+) True G43277
TU58042 other upstream 1034607 33037934 ~ 33041264 (+) False LOC120556790
TU57843 other upstream 1604266 32470795 ~ 32471605 (+) True G43051
TU58589 other downstream 518168 34665236 ~ 34667182 (+) True G43656
TU58590 other downstream 518168 34665236 ~ 34667182 (+) False G43656
TU58591 other downstream 518168 34665236 ~ 34667182 (+) False G43656
XR_005639074.1 other downstream 1292909 35439977 ~ 35440139 (+) True LOC120558245
unassigned_transcript_205 other downstream 1316704 35463772 ~ 35486235 (+) True LOC120556915

Expression Profile