RNA id: TU58445


Basic Information

Item Value
RNA id TU58445
length 299
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G43537
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 34194028 ~ 34194326 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAGACATCCGGCCTGTTGTTGCTCCACGACGCCGTCTCCTTGCAGTCCGTGTCCCGGATGGAGAGCCTCTCGGGCTGCTGCAGGACtgagtgtatatatctatggactGAGCCCAGCCAGCAACATGCACAAATCAGAGTACACAATGGGCGCGTAAGCGTCTCGTATAGCAGCGTAGCgcagttatttttatttcggcGCCCATATTATCCAACCTGTCCGTTCATACCGGGCGCGTATAGCGTCCGCGTCGGTCCGGGCGCTACAGCGATAGTTTCTCCCCTCTATTTCTTGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58441 lncRNA upstream 19222 34174509 ~ 34174806 (+) True G43533
XR_005639028.1 lncRNA upstream 35018 34158005 ~ 34159010 (+) True LOC120557850
TU58420 lncRNA upstream 46960 34075871 ~ 34147068 (+) True G43514
TU58417 lncRNA upstream 122956 34070870 ~ 34071072 (+) True G43512
TU58375 lncRNA upstream 237872 33955957 ~ 33956156 (+) True G43474
XR_005639027.1 lncRNA downstream 29106 34223432 ~ 34229932 (+) True LOC120557849
XR_005639026.1 lncRNA downstream 137118 34331444 ~ 34333902 (+) True LOC120557848
TU58519 lncRNA downstream 201587 34395913 ~ 34396336 (+) True G43595
TU58524 lncRNA downstream 206049 34400375 ~ 34400808 (+) True G43600
TU58537 lncRNA downstream 272540 34466866 ~ 34467348 (+) True G43613
XM_039798460.1 mRNA upstream 126686 34047432 ~ 34067342 (+) True LOC120557827
XM_039798461.1 mRNA upstream 126686 34047432 ~ 34067342 (+) False LOC120557827
XM_039798431.1 mRNA upstream 153745 34026311 ~ 34040283 (+) True znf831
XM_039797130.1 mRNA downstream 175903 34370229 ~ 34371094 (+) True LOC120557093
XM_039797860.1 mRNA downstream 810616 35004942 ~ 35006128 (+) True LOC120557490
XM_039797861.1 mRNA downstream 969158 35163484 ~ 35199996 (+) True ube2v1
XM_039796701.1 mRNA downstream 1080771 35275097 ~ 35278434 (+) True LOC120556883
XM_039796513.1 mRNA downstream 1122151 35316477 ~ 35319169 (+) True LOC120556789
TU58196 other upstream 848222 33340328 ~ 33345806 (+) False LOC120557806
XR_005639022.1 other upstream 857261 33262195 ~ 33336767 (+) True angpt4
TU58122 other upstream 981710 33187738 ~ 33212318 (+) True G43277
TU58042 other upstream 1152764 33037934 ~ 33041264 (+) False LOC120556790
TU57843 other upstream 1722423 32470795 ~ 32471605 (+) True G43051
TU58589 other downstream 470910 34665236 ~ 34667182 (+) True G43656
TU58590 other downstream 470910 34665236 ~ 34667182 (+) False G43656
TU58591 other downstream 470910 34665236 ~ 34667182 (+) False G43656
XR_005639074.1 other downstream 1245651 35439977 ~ 35440139 (+) True LOC120558245
unassigned_transcript_205 other downstream 1269446 35463772 ~ 35486235 (+) True LOC120556915

Expression Profile