RNA id: TU58519


Basic Information

Item Value
RNA id TU58519
length 424
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G43595
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 34395913 ~ 34396336 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGACAGTATAATTTCAAACCAGTCCATAAAAGACAATTTCAAGGGTGCACTGGCACTCTTTAGAACAGAGGCCCTTGGAAGTTACTCAAGAGGGCACAAACAGTCCACAGTTGATTGACAGAGCCCACTAGCGTCATTGGTAAGACCCTATTGAATATGTGATACTCTTTGATCCTCCTAATGGCACGCTCAACATGAATGCGAAGTCTGGCTATGGCTTGTGTCTGTCTCACCTCTTCCTGGCTGAAATGTCCACTTGGGCCTAAAAAGGGCGGGATCACAAGGGAGACATTGATTTCAGTGAGAAGGTCCTTGATGAGAAATCCTTTATCAGCCATGACCTCATCGCCTTTCCTCAAGTAGACACAGGATCCCTGATTCTCTTGTGATCTCCTTGTCAGATATCGAACCTGTATACAGGTC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639026.1 lncRNA upstream 62011 34331444 ~ 34333902 (+) True LOC120557848
XR_005639027.1 lncRNA upstream 165981 34223432 ~ 34229932 (+) True LOC120557849
TU58445 lncRNA upstream 201587 34194028 ~ 34194326 (+) True G43537
TU58441 lncRNA upstream 221107 34174509 ~ 34174806 (+) True G43533
XR_005639028.1 lncRNA upstream 236903 34158005 ~ 34159010 (+) True LOC120557850
TU58524 lncRNA downstream 4039 34400375 ~ 34400808 (+) True G43600
TU58537 lncRNA downstream 70530 34466866 ~ 34467348 (+) True G43613
TU58544 lncRNA downstream 170975 34567311 ~ 34567621 (+) True G43620
TU58551 lncRNA downstream 205870 34602206 ~ 34647158 (+) True G43627
TU58581 lncRNA downstream 266021 34662357 ~ 34662849 (+) True G43652
XM_039797130.1 mRNA upstream 24819 34370229 ~ 34371094 (+) True LOC120557093
XM_039798460.1 mRNA upstream 328571 34047432 ~ 34067342 (+) True LOC120557827
XM_039798461.1 mRNA upstream 328571 34047432 ~ 34067342 (+) False LOC120557827
XM_039798431.1 mRNA upstream 355630 34026311 ~ 34040283 (+) True znf831
XM_039797860.1 mRNA downstream 608606 35004942 ~ 35006128 (+) True LOC120557490
XM_039797861.1 mRNA downstream 767148 35163484 ~ 35199996 (+) True ube2v1
XM_039796701.1 mRNA downstream 878761 35275097 ~ 35278434 (+) True LOC120556883
XM_039796513.1 mRNA downstream 920141 35316477 ~ 35319169 (+) True LOC120556789
XM_039797836.1 mRNA downstream 1030025 35426361 ~ 35452319 (+) False LOC120557477
TU58196 other upstream 1050107 33340328 ~ 33345806 (+) False LOC120557806
XR_005639022.1 other upstream 1059146 33262195 ~ 33336767 (+) True angpt4
TU58122 other upstream 1183595 33187738 ~ 33212318 (+) True G43277
TU58042 other upstream 1354649 33037934 ~ 33041264 (+) False LOC120556790
TU57843 other upstream 1924308 32470795 ~ 32471605 (+) True G43051
TU58589 other downstream 268900 34665236 ~ 34667182 (+) True G43656
TU58590 other downstream 268900 34665236 ~ 34667182 (+) False G43656
TU58591 other downstream 268900 34665236 ~ 34667182 (+) False G43656
XR_005639074.1 other downstream 1043641 35439977 ~ 35440139 (+) True LOC120558245
unassigned_transcript_205 other downstream 1067436 35463772 ~ 35486235 (+) True LOC120556915

Expression Profile