RNA id: TU58590


Basic Information

Item Value
RNA id TU58590
length 1006
RNA type TUCP
GC content 0.38
exon number 2
gene id G43656
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 34665236 ~ 34667182 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctgggacggtgccgctctcatatcaaaaatctgaacgagtttatcagacataaaccatgacaacccaagtttgatattagtaatcagaggtgcagtgctacgcgcccctctgtgcttccgttggagcagtcgcccactcatagtctaataagcacggtgtctgtcccccggctcagatcggttaaatcaaaggtaaacaaaagatgcgctatacttaacaacctaattggaattaaaactactgcaatagaacaaaataggaaaattagatgtggactattaaatattagatctctgtcttctaaagcagtactggtaaacgagttgatatcagacaataaaattgatttattttgtcttactgaaacctggctgggccatgaagactatgttagtctaaatgaagccactcctcccagccatattaatactcaaattcctagcaGGCTCGAGGGCGaggagggagttgcagccatctttgatgcaagcctgttaattactcctaaacctaaattacattataactcatttgaaagtcttgttcttaatcttcaacatccaaaatggaaaacattacagccaattatatcgttgttatttacagggctccaggtccgtattctgaatttttatctgaattctcagagtttttatcatgtttagtccttaaatcagaccaattacTTCActttgtaggtgattttaatatccatgtggacgttgacaatgacagccttagtactgctttcaactcattactggattcaatcggtttcagtcagtgtgcacaaggcgacgcactgttttaaccacaccctcgaccttgtgctggcatatggtattgaaattgaggatttaataatattttcgcaatccggtattatcagatcattctttaatcactttcgaattcttactacctgattatattaaattagataaaagctcctacaccagatgcttatctgacagtgctatagctaaatttaaagaagatattccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58581 lncRNA upstream 2387 34662357 ~ 34662849 (+) True G43652
TU58551 lncRNA upstream 18078 34602206 ~ 34647158 (+) True G43627
TU58544 lncRNA upstream 97615 34567311 ~ 34567621 (+) True G43620
TU58537 lncRNA upstream 197888 34466866 ~ 34467348 (+) True G43613
TU58524 lncRNA upstream 264428 34400375 ~ 34400808 (+) True G43600
TU58628 lncRNA downstream 99465 34766647 ~ 34861950 (+) False G43680
TU58647 lncRNA downstream 128281 34795463 ~ 34825540 (+) False G43687
TU58648 lncRNA downstream 128431 34795613 ~ 34825540 (+) False G43687
TU58645 lncRNA downstream 128828 34796010 ~ 34825540 (+) False G43687
TU58638 lncRNA downstream 151400 34818582 ~ 34825540 (+) False G43687
XM_039797130.1 mRNA upstream 294142 34370229 ~ 34371094 (+) True LOC120557093
XM_039798460.1 mRNA upstream 597894 34047432 ~ 34067342 (+) True LOC120557827
XM_039798461.1 mRNA upstream 597894 34047432 ~ 34067342 (+) False LOC120557827
XM_039798434.1 mRNA upstream 624953 34026311 ~ 34040283 (+) False znf831
XM_039797860.1 mRNA downstream 337760 35004942 ~ 35006128 (+) True LOC120557490
XM_039797861.1 mRNA downstream 496302 35163484 ~ 35199996 (+) True ube2v1
XM_039796701.1 mRNA downstream 607915 35275097 ~ 35278434 (+) True LOC120556883
XM_039796513.1 mRNA downstream 649295 35316477 ~ 35319169 (+) True LOC120556789
XM_039797836.1 mRNA downstream 759179 35426361 ~ 35452319 (+) False LOC120557477
TU58196 other upstream 1319430 33340328 ~ 33345806 (+) False LOC120557806
XR_005639022.1 other upstream 1328469 33262195 ~ 33336767 (+) True angpt4
TU58122 other upstream 1452918 33187738 ~ 33212318 (+) True G43277
TU58042 other upstream 1623972 33037934 ~ 33041264 (+) False LOC120556790
TU57843 other upstream 2193631 32470795 ~ 32471605 (+) True G43051
XR_005639074.1 other downstream 772795 35439977 ~ 35440139 (+) True LOC120558245
unassigned_transcript_205 other downstream 796590 35463772 ~ 35486235 (+) True LOC120556915
TU58929 other downstream 996961 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_220 other downstream 1295357 35962539 ~ 35962610 (+) True trnac-gca_18
TU59402 other downstream 3499000 38166182 ~ 38167218 (+) False LOC120557027