RNA id: TU58642


Basic Information

Item Value
RNA id TU58642
length 656
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G43687
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 34795463 ~ 34825540 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTacatcaaaatgtaggaaatcttgtgccCTTTCTAACAATCTGCTCAGGGAGGCAATACGACTTTCACACTAGGCACAGTGAGCTTCCAAGTGAAGCCATCTCCACCAACTGCCGCACTGCCTCCTGTACTAAATCCTACCAGAAATgccaggaggagaagagaaacaggcccttttcagacagctgctgtcctcacatttcttacaccacacacaccattctTGGACAGGATGATCAGCAGGTtgttatgtctctcacagtatCAAACATTAAGAGATAGGAGTTACGGTTTTTGAGCTAGGAGCAGGACTATCAAAGGTGCATCAGAGCTTTGTTTCTGTGAGAAGGCCTCACTGAGACAAGAGTCGTCATAGCAACCTTTAACTGCAGTTGGTCCCTGTCATGTTGACCAATGGTGTGAAGCTACTGTTCCTAGTCTACTCCTCTCCTGTCATCCTTttcccttctcttctccttttcctcttcctaTATTCCTCTCTTCGTCTGTTTgtatgtcttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtctctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58581 lncRNA upstream 158491 34662357 ~ 34662849 (+) True G43652
TU58551 lncRNA upstream 174182 34602206 ~ 34647158 (+) True G43627
TU58544 lncRNA upstream 253719 34567311 ~ 34567621 (+) True G43620
TU58537 lncRNA upstream 353992 34466866 ~ 34467348 (+) True G43613
TU58524 lncRNA upstream 420532 34400375 ~ 34400808 (+) True G43600
TU58653 lncRNA downstream 32363 34857903 ~ 34894774 (+) True G43691
TU58626 lncRNA downstream 33250 34858790 ~ 34860468 (+) False G43680
TU58629 lncRNA downstream 33250 34858790 ~ 34861950 (+) True G43680
TU58662 lncRNA downstream 55184 34880724 ~ 34884979 (+) True G43700
TU58694 lncRNA downstream 108776 34934316 ~ 34938283 (+) True G43719
XM_039797130.1 mRNA upstream 450246 34370229 ~ 34371094 (+) True LOC120557093
XM_039798460.1 mRNA upstream 753998 34047432 ~ 34067342 (+) True LOC120557827
XM_039798461.1 mRNA upstream 753998 34047432 ~ 34067342 (+) False LOC120557827
XM_039798434.1 mRNA upstream 781057 34026311 ~ 34040283 (+) False znf831
XM_039797860.1 mRNA downstream 179402 35004942 ~ 35006128 (+) True LOC120557490
XM_039797861.1 mRNA downstream 337944 35163484 ~ 35199996 (+) True ube2v1
XM_039796701.1 mRNA downstream 449557 35275097 ~ 35278434 (+) True LOC120556883
XM_039796513.1 mRNA downstream 490937 35316477 ~ 35319169 (+) True LOC120556789
XM_039797836.1 mRNA downstream 600821 35426361 ~ 35452319 (+) False LOC120557477
TU58589 other upstream 154158 34665236 ~ 34667182 (+) True G43656
TU58590 other upstream 154158 34665236 ~ 34667182 (+) False G43656
TU58591 other upstream 154158 34665236 ~ 34667182 (+) False G43656
TU58196 other upstream 1475534 33340328 ~ 33345806 (+) False LOC120557806
XR_005639022.1 other upstream 1484573 33262195 ~ 33336767 (+) True angpt4
XR_005639074.1 other downstream 614437 35439977 ~ 35440139 (+) True LOC120558245
unassigned_transcript_205 other downstream 638232 35463772 ~ 35486235 (+) True LOC120556915
TU58929 other downstream 838603 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_220 other downstream 1136999 35962539 ~ 35962610 (+) True trnac-gca_18
TU59402 other downstream 3340642 38166182 ~ 38167218 (+) False LOC120557027

Expression Profile